RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ARHGEF5Q12774 1597 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CCDC58Q4VC31 144 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 M0R2N6 131 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 HOXD8P13378 290 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 S1PR1P21453 382 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 PLGLAQ15195 96 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 FAM174BQ3ZCQ3 159 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 ERN2Q76MJ5 926 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF598Q86UK7 904 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 OR10G2Q8NGC3 310 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 OR8S1Q8NH09 359 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 FAM110BQ8TC76 370 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 C7orf26Q96N11 449 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 GBA3Q9H227 469 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 HIPK2Q9H2X6 1198 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 DKKL1Q9UK85 242 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 PTCH2Q9Y6C5 1203 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 FMO3P31513 532 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CTSOP43234 321 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 CAMLGP49069 296 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 NIPAL3Q6P499 406 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 KDELC1Q6UW63 502 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 BBS12Q6ZW61 710 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 LRTOMTQ8WZ04 291 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 MYOCQ99972 504 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 PRDM12Q9H4Q4 367 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 DEC1Q9P2X7 70 aa13.6□□□□□ -0.23
CCDC88A-201ENST00000263630 NOBOXO60393 691 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 EDF1O60869 148 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MPSTP25325 297 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 CHRNB4P30926 498 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 PRKXP51817 358 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 PPATQ06203 517 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC22A16Q86VW1 577 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NUSAP1Q9BXS6 441 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GBA2Q9HCG7 927 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 SYNGR4O95473 234 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 CDH1P12830 882 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NSG1P42857 185 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ANKRD46Q86W74 232 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GID4Q8IVV7 300 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 C2orf73Q8N5S3 287 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ARL5BQ96KC2 179 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 C7orf34Q96L11 122 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MTFR1LQ9H019 292 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NCANO14594 1321 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MPPED1O15442 326 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 H1F0P07305 194 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 WNT3AP56704 352 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 FADDQ13158 208 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF674Q2M3X9 581 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 CNPY1Q3B7I2 92 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 USP51Q70EK9 711 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 RBM15BQ8NDT2 890 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 OR4K2Q8NGD2 314 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 C17orf62Q9BQA9 187 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 PTGES2Q9H7Z7 377 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MEPEQ9NQ76 525 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 PXKQ7Z7A4 578 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 TSPAN33Q86UF1 283 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 SAMD10Q9BYL1 202 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GPATCH2Q9NW75 528 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 IL1AP01583 271 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 THBS2P35442 1172 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 RAB5CP51148 216 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF84P51523 738 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 SMAD3P84022 425 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM80Q96HE8 168 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 BTBD1Q9H0C5 482 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 KLHL13Q9P2N7 655 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MYH7BA7E2Y1 1941 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 AMY2BP19961 511 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MSX1P28360 303 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MRPS6P82932 125 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 DECR1Q16698 335 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM35AQ53FP2 167 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 RHBDF2Q6PJF5 856 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 DPY19L3Q6ZPD9 716 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 TWNKQ96RR1 684 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 URM1Q9BTM9 101 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 FCER2P06734 321 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 RPS3P23396 243 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ART1P52961 327 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 CYCSP99999 105 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NPTX1Q15818 432 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MBOAT1Q6ZNC8 495 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GCDHQ92947 438 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GLYATL1Q969I3 302 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 RRNAD1Q96FB5 475 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF514Q96K75 400 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 CADM1Q9BY67 442 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NDST3O95803 873 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 C1RP00736 705 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 GP1BBP13224 206 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ENDOUP21128 410 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 NDUFS1P28331 727 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ACTR1BP42025 376 aa13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 MSI2Q96DH6 328 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF334Q9HCZ1 680 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-201ENST00000263630 AFDNP55196 1824 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms