RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PDLIM5Q96HC4 596 aaKnown RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 CHCHD6Q9BRQ6 235 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 EHD1Q9H4M9 534 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 ZBTB20Q9HC78 741 aaPredicted RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 PALMDQ9NP74 551 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 CLEC4EQ9ULY5 219 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 NEUROG3Q9Y4Z2 214 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 DICER1Q9UPY3 1922 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 A6NL46 340 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 FAM220BPB1ANY3 271 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SAP18O00422 153 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 RRM2P31350 389 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 NSG1P42857 185 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 GABARAPL2P60520 117 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 IFITM3Q01628 133 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 ELAVL2Q12926 359 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 NAE1Q13564 534 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 TP53BP2Q13625 1128 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 VMACQ2NL98 169 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 HKDC1Q2TB90 917 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 CATSPEREQ5SY80 951 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 GPRC6AQ5T6X5 926 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 HEATR4Q86WZ0 1026 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 CADM3Q8N126 398 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SCAMP4Q969E2 229 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 CEP44Q9C0F1 390 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SIAEQ9HAT2 523 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 IMPAD1Q9NX62 359 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SPASTQ9UBP0 616 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 TRPS1Q9UHF7 1281 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 RPS6KA6Q9UK32 745 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 IGSF6O95976 241 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 ZDHHC11BP0C7U3 371 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 LAMP1P11279 417 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 PRPS2P11908 318 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 PABPC1P11940 636 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 CYP4F8P98187 520 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 IRF5Q13568 498 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 FRG2Q64ET8 278 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 NEK5Q6P3R8 708 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SHQ1Q6PI26 577 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 CCDC103Q8IW40 242 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 CAPSLQ8WWF8 208 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 CNDP2Q96KP4 475 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 FRG2BQ96QU4 278 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SLC7A5P2Q9GIP4 190 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 TPT1P8Q9HAU6 139 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 MBD1Q9UIS9 605 aaPredicted RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 NOX1Q9Y5S8 564 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 GRXCR2A6NFK2 248 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 TMEM189-UBE2V1I3L0A0 370 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SUV39H1O43463 412 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 KRT75O95678 551 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 FPR1P21462 350 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SOAT1P35610 550 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 KRT20P35900 424 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 TRPC1P48995 793 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 PRIM2P49643 509 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 VEGFBP49765 207 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 MRPL58Q14197 206 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 ZNF551Q7Z340 670 aaPredicted RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 TMCO2Q7Z6W1 182 aaPredicted RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 DNAJB7Q7Z6W7 309 aaPredicted RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 HJURPQ8NCD3 748 aaPredicted RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 PJA1Q8NG27 643 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 OR4K1Q8NGD4 311 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 NTMT1Q9BV86 223 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SMG9Q9H0W8 520 aaKnown RBP12.26□□□□□ -0.45
LIG1-201ENST00000263274 MARCH7Q9H992 704 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 SERHLQ9NQF3 203 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 DNAJC11Q9NVH1 559 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 OGDHLQ9ULD0 1010 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 FZD4Q9ULV1 537 aa12.26□□□□□ -0.45
LIG1-201ENST00000263274 H7C0S8 307 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 RGS5O15539 181 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 PCMT1P22061 227 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 S100A5P33763 92 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 CTSOP43234 321 aaPredicted RBP12.25□□□□□ -0.45
LIG1-201ENST00000263274 ATN1P54259 1190 aaPredicted RBP12.25□□□□□ -0.45
LIG1-201ENST00000263274 CDH12P55289 794 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 AP1S1P61966 158 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 DAB2P98082 770 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 NPRL3Q12980 569 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 ADNP2Q6IQ32 1131 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 CHST9Q7L1S5 443 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 TRIM46Q7Z4K8 759 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 HTATIP2Q9BUP3 242 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 RNF167Q9H6Y7 350 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 WNT9AO14904 365 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 DNTTP04053 509 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 CAMK2GQ13555 558 aaPredicted RBP12.25□□□□□ -0.45
LIG1-201ENST00000263274 FXNQ16595 210 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 TRIM71Q2Q1W2 868 aaKnown RBP12.25□□□□□ -0.45
LIG1-201ENST00000263274 INAVAQ3KP66 663 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 DEPDC1Q5TB30 811 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 KIAA1614Q5VZ46 1190 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 GTPBP3Q969Y2 492 aaKnown RBP12.25□□□□□ -0.45
LIG1-201ENST00000263274 P2RY13Q9BPV8 354 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 TM9SF3Q9HD45 589 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 IL1RAPQ9NPH3 570 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms