RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RFXAPO00287 272 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 TEX28O15482 410 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 FFAR2O15552 330 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 RGS14O43566 566 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 ERN1O75460 977 aaKnown RBP13.94□□□□□ -0.18
SDC1-201ENST00000254351 ENGP17813 658 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 FADDQ13158 208 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 BTBD16Q32M84 506 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 SLX4IPQ5VYV7 408 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 FBXL22Q6P050 247 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 BCDIN3DQ7Z5W3 292 aaKnown RBP13.94□□□□□ -0.18
SDC1-201ENST00000254351 SCD5Q86SK9 330 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 AMIGO1Q86WK6 493 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 NKAPQ8N5F7 415 aaKnown RBP13.94□□□□□ -0.18
SDC1-201ENST00000254351 OR9Q2Q8NGE9 314 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 SPASTQ9UBP0 616 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 MKLN1Q9UL63 735 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 PCDHB5Q9Y5E4 795 aa13.94□□□□□ -0.18
SDC1-201ENST00000254351 SMPD1P17405 629 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 FPR1P21462 350 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 GRK4P32298 578 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 GANABQ14697 944 aaKnown RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 GPAT3Q53EU6 434 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 TMPRSS11AQ6ZMR5 421 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CCDC117Q8IWD4 279 aaPredicted RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 SLC5A8Q8N695 610 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 PPP3R2Q96LZ3 170 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 MGLLQ99685 303 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 NIPSNAP1Q9BPW8 284 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 BCL7BQ9BQE9 202 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 BOCQ9BWV1 1114 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CLPBQ9H078 707 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 NARFLQ9H6Q4 476 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 ZNF408Q9H9D4 720 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 PARP14Q460N5 1801 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 FAM227AF5H4B4 570 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CXCL11O14625 94 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 STX16O14662 325 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 SLITRK5O94991 958 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 APOL3O95236 402 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 RETP07949 1114 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 SMIM10L2AP0DMW4 78 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 SMIM10L2BP0DMW5 78 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 IL7P13232 177 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CTPS1P17812 591 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 IL12RB1P42701 662 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 OR3A3P47888 321 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 LHX1P48742 406 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CDH12P55289 794 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CAV3P56539 151 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 MS4A13Q5J8X5 152 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 DPY19L3Q6ZPD9 716 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 YIPF7Q8N8F6 280 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 B3GNT7Q8NFL0 401 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 PPTC7Q8NI37 304 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 FBLIM1Q8WUP2 373 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 MYDGFQ969H8 173 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 ASPNQ9BXN1 380 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 CIPCQ9C0C6 399 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 ZYG11BQ9C0D3 744 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 UCKL1Q9NWZ5 548 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 STMN3Q9NZ72 180 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 A0A0G2JMZ2 1700 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 LRRC37A2A6NM11 1700 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 A0A0G2JLL6 359 aaPredicted RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 CLCA1A8K7I4 914 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 GPX5O75715 221 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 OTCP00480 354 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 YES1P07947 543 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 FKBP1BP68106 108 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 KRR1Q13601 381 aaKnown RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 TUBA3EQ6PEY2 450 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 LINGO4Q6UY18 593 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 LINC00299Q6ZSB3 139 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 PRRT2Q7Z6L0 340 aaPredicted RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 TIGD4Q8IY51 512 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 KLHDC9Q8NEP7 349 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 OR6K2Q8NGY2 324 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 TRMT61AQ96FX7 289 aaKnown RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 ABHD16BQ9H3Z7 469 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 TM9SF3Q9HD45 589 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 ABCC13Q9NSE7 274 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 PSORS1C1Q9UIG5 152 aa13.93□□□□□ -0.18
SDC1-201ENST00000254351 SAMD4AQ9UPU9 718 aaKnown RBP13.93□□□□□ -0.18
SDC1-201ENST00000254351 NYNRINQ9P2P1 1898 aaKnown RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 NINQ8N4C6 2090 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 LOC285095A0A1B0GVY8 99 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 J3KTA2 159 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 CAPN5O15484 640 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 IL6P05231 212 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 PSKH1P11801 424 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 SUOXP51687 545 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 TWF1Q12792 350 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 SPDYE7PQ495Y7 208 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 INO80DQ53TQ3 878 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 C10orf62Q5T681 223 aaPredicted RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 MFSD14CQ5VZR4 134 aa13.92□□□□□ -0.18
SDC1-201ENST00000254351 PTRHD1Q6GMV3 140 aaKnown RBP13.92□□□□□ -0.18
SDC1-201ENST00000254351 CCDC28AQ8IWP9 274 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms