RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CACNG4Q9UBN1 327 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ADD3Q9UEY8 706 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 HACL1Q9UJ83 578 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TSPAN16Q9UKR8 245 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PNMA2Q9UL42 364 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ABT1Q9ULW3 272 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 PPP1R3CQ9UQK1 317 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 WDR83OSQ9Y284 106 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PTRH2Q9Y3E5 179 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 WIPI2Q9Y4P8 454 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GON4LQ3T8J9 2241 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ITIH6Q6UXX5 1313 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FBN1P35555 2871 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 OTOGLQ3ZCN5 2332 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FER1L5A0AVI2 2057 aa0.34□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-30-2A0A087WSY4 118 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 IGHV3-38A0A0C4DH36 116 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SPRR5A0A1B0GTR4 108 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 hCG_1807616A0A1W2PRN6 198 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FSD2A1L4K1 749 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 A6NCN8 305 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ANKRD61A6NGH8 418 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ACOD1A6NK06 481 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SNURFLB1AK76 121 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 B4DLN1 442 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SHISA9B4DS77 424 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NPIPB9F8W1W9 429 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 RNF103O00237 685 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 UBE2CO00762 179 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CTDSP2O14595 271 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 AP3D1O14617 1153 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ARPC2O15144 300 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TEX28O15482 410 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GPRIN2O60269 458 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 PRAMEF11O60813 436 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZBED4O75132 1171 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 AVILO75366 819 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 LRCH4O75427 683 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ERAL1O75616 437 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 PSMD10O75832 226 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SLCO2B1O94956 709 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NXPH2O95156 264 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZWINTO95229 277 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ATP1B1P05026 303 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ATP5BP06576 529 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MELTFP08582 738 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 HCKP08631 526 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 LINGO3P0C6S8 592 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SMIM18P0DKX4 95 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CSH1P0DML2 217 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CSH2P0DML3 217 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NR2F1P10589 423 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SLC2A2P11168 524 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 VPREB1P12018 145 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 DARSP14868 501 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 IL11P20809 199 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CDH3P22223 829 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 JAK1P23458 1154 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 DNASE1P24855 282 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 HLA-FP30511 346 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SOX3P41225 446 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MTHFRP42898 656 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 OR3A2P47893 321 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZFP36L2P47974 494 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 LHX1P48742 406 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GSK3BP49841 420 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 GMPSP49915 693 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 ALDH3A2P51648 485 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CLCN4P51793 760 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 VAMP7P51809 220 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 STAT2P52630 851 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 MRPL12P52815 198 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 MAPK12P53778 367 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 EIF5P55010 431 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 XGP55808 180 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TMEM50BP56557 158 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 HERV-K104P61576 105 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CYCSP99999 105 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZFP36L1Q07352 338 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 CD300CQ08708 224 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CUL3Q13618 768 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CUL4AQ13619 759 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CDH18Q13634 790 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 TRIM29Q14134 588 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 FASTKD3Q14CZ7 662 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 RRS1Q15050 365 aaKnown RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 TAF13Q15543 124 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 C3AR1Q16581 482 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 NTRK2Q16620 822 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CCL14Q16627 93 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 C15orf59Q2T9L4 293 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 ZSCAN23Q3MJ62 389 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CBWD6Q4V339 395 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 LBHQ53QV2 105 aaPredicted RBP0.34□□□□□ -2.36
VPS35-212ENST00000640313 HSP90AB4PQ58FF6 505 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 CBWD3Q5JTY5 395 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SPECC1Q5M775 1068 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 SLC35D3Q5M8T2 416 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 HYIQ5T013 277 aa0.34□□□□□ -2.36
VPS35-212ENST00000640313 C20orf194Q5TEA3 1177 aa0.34□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms