RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FASTKQ14296 549 aaKnown RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 PRTGQ2VWP7 1150 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 AARS2Q5JTZ9 985 aaKnown RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 BNC2Q6ZN30 1099 aaPredicted RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 ZNF808Q8N4W9 903 aaPredicted RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 HMGCLL1Q8TB92 370 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 LURAP1Q96LR2 239 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 LACRTQ9GZZ8 138 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 CHST11Q9NPF2 352 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 RIC8BQ9NVN3 520 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 ABI3Q9P2A4 366 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 AMFRQ9UKV5 643 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 PACSIN2Q9UNF0 486 aaPredicted RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 TCAF1Q9Y4C2 921 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 PCNX1Q96RV3 2341 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 OR2A25A4D2G3 310 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 SOWAHDA6NJG2 315 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 CD3EAPO15446 510 aaKnown RBP18.44■□□□□ 0.54
CLN3-262ENST00000637699 SUN1O94901 812 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 CRYABP02511 175 aaKnown RBP18.44■□□□□ 0.54
CLN3-262ENST00000637699 ITGAMP11215 1152 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 COX6B1P14854 86 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 CMPK1P30085 196 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 CA7P43166 264 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 ZNF75DP51815 510 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 DSG2Q14126 1118 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 ZNF630Q2M218 657 aaPredicted RBP18.44■□□□□ 0.54
CLN3-262ENST00000637699 HIBCHQ6NVY1 386 aaPredicted RBP18.44■□□□□ 0.54
CLN3-262ENST00000637699 OTOAQ7RTW8 1153 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 PEX26Q7Z412 305 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 GAS2L3Q86XJ1 694 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 UBL4BQ8N7F7 174 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 DNAJB8Q8NHS0 232 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 SUN3Q8TAQ9 357 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 ATG4AQ8WYN0 398 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 MMABQ96EY8 250 aaPredicted RBP18.44■□□□□ 0.54
CLN3-262ENST00000637699 MRFAP1L1Q96HT8 127 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 PANX3Q96QZ0 392 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 ITGB1BP2Q9UKP3 347 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 MRFAP1Q9Y605 127 aa18.44■□□□□ 0.54
CLN3-262ENST00000637699 A0A1W2PQ72 361 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 IPO7O95373 1038 aaKnown RBP18.43■□□□□ 0.54
CLN3-262ENST00000637699 IFNB1P01574 187 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 CCNFP41002 786 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 TTPAP49638 278 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 HKDC1Q2TB90 917 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 ABHD17BQ5VST6 288 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 MTFR2Q6P444 385 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 RIPOR1Q6ZS17 1223 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 CSNK1A1LQ8N752 337 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 FOPNLQ96NB1 174 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 P2RY12Q9H244 342 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 SYNPO2LQ9H987 977 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 CHRAC1Q9NRG0 131 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 C14orf105Q9NVL8 296 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 STMN3Q9NZ72 180 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 GNPTGQ9UJJ9 305 aa18.43■□□□□ 0.54
CLN3-262ENST00000637699 RUVBL1Q9Y265 456 aaKnown RBP18.43■□□□□ 0.54
CLN3-262ENST00000637699 REXO2Q9Y3B8 237 aaKnown RBP18.43■□□□□ 0.54
CLN3-262ENST00000637699 CCDC168Q8NDH2 2452 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 BTNL10A8MVZ5 291 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 KPNA5O15131 536 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 PRPF4O43172 522 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLN3-262ENST00000637699 PRAMEF2O60811 474 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 VPS26AO75436 327 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 NDUFS3O75489 264 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 WISP2O76076 250 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 FDFT1P37268 417 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 PMP22Q01453 160 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 RBPJQ06330 500 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 ZNF33BQ06732 778 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 TSTA3Q13630 321 aaPredicted RBP18.42■□□□□ 0.54
CLN3-262ENST00000637699 PCOLCEQ15113 449 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 SYT16Q17RD7 645 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 LRRC8BQ6P9F7 803 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 SUSD1Q6UWL2 747 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 RPTNQ6XPR3 784 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 PRUNE1Q86TP1 453 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 AMER3Q8N944 861 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 PPHLN1Q8NEY8 458 aaKnown RBP18.42■□□□□ 0.54
CLN3-262ENST00000637699 MAGEC3Q8TD91 643 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 ZNF700Q9H0M5 742 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 RAB6BQ9NRW1 208 aa18.42■□□□□ 0.54
CLN3-262ENST00000637699 OR5H15A6NDH6 313 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 ANXA5P08758 320 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 MYBL2P10244 700 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 STIP1P31948 543 aaKnown RBP18.41■□□□□ 0.54
CLN3-262ENST00000637699 SLC26A3P40879 764 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 EMP3P54852 163 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 EIF3BP55884 814 aaKnown RBP18.41■□□□□ 0.54
CLN3-262ENST00000637699 NAA25Q14CX7 972 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.41■□□□□ 0.54
CLN3-262ENST00000637699 NEK10Q6ZWH5 1172 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 PEX13Q92968 403 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 MVB12AQ96EY5 273 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 PLCD4Q9BRC7 762 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 RNF32Q9H0A6 362 aa18.41■□□□□ 0.54
CLN3-262ENST00000637699 MRPS30Q9NP92 439 aaKnown RBP18.41■□□□□ 0.54
CLN3-262ENST00000637699 MKKSQ9NPJ1 570 aaPredicted RBP18.41■□□□□ 0.54
CLN3-262ENST00000637699 SPATA7Q9P0W8 599 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms