RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SLC37A2Q8TED4 501 aa17.76■□□□□ 0.43
CLN3-254ENST00000637050 VCANP13611 3396 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 A0A1B0GTW7 788 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 PIPSLA2A3N6 862 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 HRO43593 1189 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 IDO1P14902 403 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 PRPH2P23942 346 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 PRDX1Q06830 199 aaKnown RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 CSTF3Q12996 717 aaKnown RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 IMPG1Q17R60 797 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 C10orf62Q5T681 223 aaPredicted RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 ICE2Q659A1 982 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SFTPA2Q8IWL1 248 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SDR16C5Q8N3Y7 309 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 FNDC5Q8NAU1 212 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 OR4E2Q8NGC2 313 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 LMX1AQ8TE12 382 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 ZDHHC1Q8WTX9 485 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 JPH3Q8WXH2 748 aaPredicted RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 NELL1Q92832 810 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SLC7A6OSQ96CW6 309 aaPredicted RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 REPS1Q96D71 796 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 CMTM5Q96DZ9 223 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SPNS1Q9H2V7 528 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SRMSQ9H3Y6 488 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 ERVMER34-1Q9H9K5 563 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 SDR39U1Q9NRG7 319 aaPredicted RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 AIG1Q9NVV5 245 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 TSC22D4Q9Y3Q8 395 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 GPR45Q9Y5Y3 372 aa17.75■□□□□ 0.43
CLN3-254ENST00000637050 TNRC6BQ9UPQ9 1833 aaKnown RBP17.75■□□□□ 0.43
CLN3-254ENST00000637050 A0A1B0GVT2 93 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 GPR37L1O60883 481 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 RSL1D1O76021 490 aaKnown RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 CHRM5P08912 532 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 HSD3B1P14060 373 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 GPX3P22352 226 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 HSD3B2P26439 372 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 PEBP1P30086 187 aaKnown RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 DIO3P55073 304 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 GPR18Q14330 331 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 HERC3Q15034 1050 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 HIST2H2ACQ16777 129 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 RFTN2Q52LD8 501 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 HIST2H2AA3Q6FI13 130 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ASRGL1Q7L266 308 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ADGRF3Q8IZF5 1079 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ZNF548Q8NEK5 533 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 OR4K1Q8NGD4 311 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 BRINP2Q9C0B6 783 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 BRF2Q9HAW0 419 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 LRTM1Q9HBL6 345 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 CUEDC1Q9NWM3 386 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 C1orf109Q9NX04 203 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 SPHK1Q9NYA1 384 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 PSMD12O00232 456 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 YY2O15391 372 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 AQP9O43315 295 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 COX4I1P13073 169 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 GNSP15586 552 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 CD1EP15812 388 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ACADVLP49748 655 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 RASSF2P50749 326 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 STX1BP61266 288 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ABATP80404 500 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ACTN3Q08043 901 aaPredicted RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 GRIK2Q13002 908 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 BMP8AQ7Z5Y6 402 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 SLC9B2Q86UD5 537 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ZFAND4Q86XD8 727 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 RBM12BQ8IXT5 1001 aaKnown RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 KRT78Q8N1N4 520 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 FBXL6Q8N531 539 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 POU5F2Q8N7G0 328 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 UBE2E3Q969T4 207 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 MTERF1Q99551 399 aaKnown RBP17.74■□□□□ 0.43
CLN3-254ENST00000637050 TMEM74BQ9NUR3 256 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 PILRBQ9UKJ0 227 aa17.74■□□□□ 0.43
CLN3-254ENST00000637050 ARHGEF17Q96PE2 2063 aaPredicted RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 BTN3A3O00478 584 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 THRAP10827 490 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 PCNAP12004 261 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 CTSKP43235 329 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 CCR8P51685 355 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 MEF2AQ02078 507 aaPredicted RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 MAD2L1Q13257 205 aaPredicted RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 KIAA0040Q15053 153 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 PLCL1Q15111 1095 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 PCM1Q15154 2024 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 KIF19Q2TAC6 998 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 ADNP2Q6IQ32 1131 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 TMIGD1Q6UXZ0 262 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 MIER2Q8N344 545 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 RNF175Q8N4F7 328 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 ZNF740Q8NDX6 193 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 HUS1BQ8NHY5 278 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 RP9Q8TA86 221 aaKnown RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 CMTM7Q96FZ5 175 aa17.73■□□□□ 0.43
CLN3-254ENST00000637050 ZC3H10Q96K80 434 aaKnown RBP17.73■□□□□ 0.43
CLN3-254ENST00000637050 AIF1LQ9BQI0 150 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms