RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SERPINA9Q86WD7 417 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 KRTAP1-3Q8IUG1 177 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 AMER3Q8N944 861 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 SLC22A18Q96BI1 424 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 FCRL5Q96RD9 977 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 FICDQ9BVA6 458 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 ADAM21Q9UKJ8 722 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 PRSS21Q9Y6M0 314 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 LRRD1A4D1F6 860 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 USP27XA6NNY8 438 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 GABRR3A8MPY1 467 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 KDM1AO60341 852 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 CDC40O60508 579 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLN3-249ENST00000636685 PROSCO94903 275 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 ATE1O95260 518 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 GSTM1P09488 218 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 C8orf89P0DMQ9 161 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 ACRV1P26436 265 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 DYNLT1P63172 113 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 GSTM4Q03013 218 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 MPP3Q13368 585 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 PLAG1Q6DJT9 500 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 ARSKQ6UWY0 536 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 LANCL3Q6ZV70 420 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 TMTC1Q8IUR5 882 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 ZC3H7AQ8IWR0 971 aaKnown RBP13.73□□□□□ -0.21
CLN3-249ENST00000636685 ZUFSPQ96AP4 578 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 CABS1Q96KC9 395 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 OLFM1Q99784 485 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 FSD1LQ9BXM9 530 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 TGIF2Q9GZN2 237 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 TP63Q9H3D4 680 aaPredicted RBP13.73□□□□□ -0.21
CLN3-249ENST00000636685 MKKSQ9NPJ1 570 aaPredicted RBP13.73□□□□□ -0.21
CLN3-249ENST00000636685 KLHL8Q9P2G9 620 aaPredicted RBP13.73□□□□□ -0.21
CLN3-249ENST00000636685 CDC14AQ9UNH5 594 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 HEATR5BQ9P2D3 2071 aa13.73□□□□□ -0.21
CLN3-249ENST00000636685 ZANQ9Y493 2812 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 SLC5A10A0PJK1 596 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 C5orf60A6NFR6 353 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 C3orf70A6NLC5 250 aaPredicted RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 FAM171A2A8MVW0 826 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 TARM1B6A8C7 271 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 SUN1O94901 812 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 RAF1P04049 648 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 MC4RP32245 332 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 SLC26A3P40879 764 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 RFC3P40938 356 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 ZNF140P52738 457 aaPredicted RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 CSE1LP55060 971 aaKnown RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 YBX1P67809 324 aaKnown RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 GRB7Q14451 532 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 PRTGQ2VWP7 1150 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 SYTL3Q4VX76 610 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 EMC4Q5J8M3 183 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 ZNF468Q5VIY5 522 aaPredicted RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 TAS2R42Q7RTR8 314 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 CPEB2Q7Z5Q1 589 aaKnown RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 RFX6Q8HWS3 928 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 ZNF567Q8N184 647 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 MYRIPQ8NFW9 859 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 MMABQ96EY8 250 aaPredicted RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 APOL2Q9BQE5 337 aa13.72□□□□□ -0.21
CLN3-249ENST00000636685 MAK16Q9BXY0 300 aaKnown RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 SAE1Q9UBE0 346 aaPredicted RBP13.72□□□□□ -0.21
CLN3-249ENST00000636685 TRBV5-4A0A0C4DH59 114 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 LRRC10BA6NIK2 292 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 TFECO14948 347 aaPredicted RBP13.71□□□□□ -0.21
CLN3-249ENST00000636685 PRPF4O43172 522 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLN3-249ENST00000636685 NME2P1O60361 137 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 SLC25A12O75746 678 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 AP2A2O94973 939 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 ERVK-10P10266 1014 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 NME2P22392 152 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 PSMB5P28074 263 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 ARHGAP25P42331 645 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 MAT1AQ00266 395 aaKnown RBP13.71□□□□□ -0.21
CLN3-249ENST00000636685 KEAP1Q14145 624 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 GPR33Q49SQ1 333 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 UNC5DQ6UXZ4 953 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 PID1Q7Z2X4 250 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 HORMAD2Q8N7B1 307 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 OR2L8Q8NGY9 312 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 METTL21AQ8WXB1 218 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 MIPEPQ99797 713 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 DMRT3Q9NQL9 472 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 SMARCAL1Q9NZC9 954 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 CRIM1Q9NZV1 1036 aa13.71□□□□□ -0.21
CLN3-249ENST00000636685 ZNF487B1APH4 448 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 INAFM1C9JVW0 142 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 ANXA5P08758 320 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 TFEBP19484 476 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 KIR2DL3P43628 341 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 NR0B1P51843 470 aaKnown RBP13.7□□□□□ -0.22
CLN3-249ENST00000636685 MSLNQ13421 630 aaPredicted RBP13.7□□□□□ -0.22
CLN3-249ENST00000636685 DBN1Q16643 649 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 CMPK2Q5EBM0 449 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 ACAD11Q709F0 780 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 RNF44Q7L0R7 432 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 PIANPQ8IYJ0 282 aa13.7□□□□□ -0.22
CLN3-249ENST00000636685 SHISA5Q8N114 240 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms