RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TRAPPC9Q96Q05 1148 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 EGFL8Q99944 293 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 EPB41L4BQ9H329 900 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 FANCEQ9HB96 536 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 PDE7BQ9NP56 450 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 STOX2Q9P2F5 926 aaPredicted RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 ANKMY1Q9P2S6 941 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 ZNF180Q9UJW8 692 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 MRPS18BQ9Y676 258 aaKnown RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 COL12A1Q99715 3063 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 RELNP78509 3460 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 A0A087X1B8 175 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 CCNDBP1O95273 360 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 SLC35E2BP0CK96 405 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 FOLR1P15328 257 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 MAGP20916 626 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 CMPK1P30085 196 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 GMPRP36959 345 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 STAT5AP42229 794 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 AP1S2P56377 157 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 ATP6V0D1P61421 351 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 MC1RQ01726 317 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 ACY1Q03154 408 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 LGSNQ5TDP6 509 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 EMBQ6PCB8 327 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 SBSNQ6UWP8 590 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 D2HGDHQ8N465 521 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 ESX1Q8N693 406 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 FLVCR1-AS1Q8TAF5 88 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 ANKRD7Q92527 254 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 EXT2Q93063 718 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 PARD6BQ9BYG5 372 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 VPS11Q9H270 941 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 CCDC177Q9NQR7 707 aaPredicted RBP17.12■□□□□ 0.33
CLN3-247ENST00000636351 TAC3Q9UHF0 121 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 NOVA2Q9UNW9 492 aaKnown RBP17.12■□□□□ 0.33
CLN3-247ENST00000636351 BTRCQ9Y297 605 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 KLHL20Q9Y2M5 609 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 ACOT9Q9Y305 439 aa17.12■□□□□ 0.33
CLN3-247ENST00000636351 A0A096LPK6 155 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 A0A1W2PPV9 198 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 HMX2A2RU54 273 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 SMIM23A6NLE4 172 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 TRIM49D1C9J1S8 452 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 C2P06681 752 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 LTA4HP09960 611 aaKnown RBP17.11■□□□□ 0.33
CLN3-247ENST00000636351 CD1DP15813 335 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 ZNF28P17035 718 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 F8A1P23610 371 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 TBPL1P62380 186 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 IRF9Q00978 393 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 UBAP2LQ14157 1087 aaKnown RBP17.11■□□□□ 0.33
CLN3-247ENST00000636351 MAP7Q14244 749 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 GPR19Q15760 415 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 AGTRAPQ6RW13 159 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 CCDC91Q7Z6B0 441 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 OR2L3Q8NG85 312 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 AENQ8WTP8 325 aaKnown RBP17.11■□□□□ 0.33
CLN3-247ENST00000636351 KCTD4Q8WVF5 259 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 ATL1Q8WXF7 558 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 ULBP3Q9BZM4 244 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 ATG10Q9H0Y0 220 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 FGF21Q9NSA1 209 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 PSMC3IPQ9P2W1 217 aaPredicted RBP17.11■□□□□ 0.33
CLN3-247ENST00000636351 RARRES3Q9UL19 164 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 OARD1Q9Y530 152 aa17.11■□□□□ 0.33
CLN3-247ENST00000636351 SNRNP200O75643 2136 aaKnown RBP17.11■□□□□ 0.33
CLN3-247ENST00000636351 LRRK2Q5S007 2527 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 NCF1BA6NI72 391 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 NCF1CA8MVU1 366 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 TMEM150CB9EJG8 249 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 E7ENX8 843 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 FKBP9O95302 570 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 ALDOAP04075 364 aaKnown RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 S100BP04271 92 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 SHBGP04278 402 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 SNRPAP09012 282 aaKnown RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 NCF1P14598 390 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 TFEBP19484 476 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 HSD17B3P37058 310 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 TAP2Q03519 686 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 NAE1Q13564 534 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 NAA30Q147X3 362 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 NAA25Q14CX7 972 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 PPP1R3AQ16821 1122 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 FAM83EQ2M2I3 478 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 DEFB110Q30KQ9 67 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 CRTC2Q53ET0 693 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 LACTB2Q53H82 288 aaPredicted RBP17.1■□□□□ 0.33
CLN3-247ENST00000636351 PRAMEF13Q5VWM6 474 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 KLC3Q6P597 504 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 PPP1R3BQ86XI6 285 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 GPSM1Q86YR5 675 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 FBXL8Q96CD0 374 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 TCTN2Q96GX1 697 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 DHRS4Q9BTZ2 278 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 TWSG1Q9GZX9 223 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 ALG9Q9H6U8 611 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 NMRAL1Q9HBL8 299 aa17.1■□□□□ 0.33
CLN3-247ENST00000636351 MRPS30Q9NP92 439 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms