RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GSTK1Q9Y2Q3 226 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 TACR2P21452 398 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 PTGER3P43115 390 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 FCGRTP55899 365 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 YBEYP58557 167 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 NFE2L1Q14494 772 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 MS4A13Q5J8X5 152 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 PIK3R6Q5UE93 754 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 PTRH1Q86Y79 214 aaKnown RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 OR4A15Q8NGL6 344 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 SLC22A4Q9H015 551 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 SMOC2Q9H3U7 446 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 KLHL1Q9NR64 748 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 NKIRAS2Q9NYR9 191 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 ZNF224Q9NZL3 707 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 DNAJC27Q9NZQ0 273 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 SPO11Q9Y5K1 396 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 ANKDD1BA6NHY2 528 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 JRKO75564 520 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 MYCP01106 439 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 KCNQ1P51787 676 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 BCL2L1Q07817 233 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 MAD2L1BPQ15013 274 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 CTF1Q16619 201 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 TUBA3EQ6PEY2 450 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 CEP68Q76N32 757 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 TIGD4Q8IY51 512 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 OR8H3Q8N146 312 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 LRRC20Q8TCA0 184 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 MAL2Q969L2 176 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 SLC35B4Q969S0 331 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 CNDP2Q96KP4 475 aaKnown RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 PCDH10Q9P2E7 1040 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 FZD4Q9ULV1 537 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 TMEM98Q9Y2Y6 226 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 H3BM21 787 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 PTGESO14684 152 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 ADAMDEC1O15204 470 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 PRKAR1AP10644 381 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 EPHA2P29317 976 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 SSTR4P31391 388 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 LIPAP38571 399 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 ZNF280AP59817 542 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 TAF1AQ15573 450 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 IQCCQ4KMZ1 466 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 TSPYL5Q86VY4 417 aaPredicted RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 AMIGO1Q86WK6 493 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 DTX3Q8N9I9 347 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 GTF2H4Q92759 462 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 FRMD6Q96NE9 622 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 DCAF13Q9NV06 445 aaKnown RBP10.74□□□□□ -0.69
CLN3-244ENST00000636147 TAS2R16Q9NYV7 291 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 N6AMT1Q9Y5N5 214 aa10.74□□□□□ -0.69
CLN3-244ENST00000636147 TCRBV5S2A0A599 114 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 I3L521 148 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 MANBAO00462 879 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 GBAP04062 536 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 RPS17P08708 135 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 NR2F6P10588 404 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 MYL9P24844 172 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 GPC1P35052 558 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ADRA1AP35348 466 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 RORCP51449 518 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 COX10Q12887 443 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 SEMA3BQ13214 749 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZBTB6Q15916 424 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 CRTC2Q53ET0 693 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 PNCKQ6P2M8 343 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ERICH5Q6P6B1 374 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZBTB2Q8N680 514 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 OR5AK3PQ8NH89 298 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 NT5C3BQ969T7 300 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 EGLN2Q96KS0 407 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 C8orf48Q96LL4 319 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 FOPNLQ96NB1 174 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 PKP4Q99569 1192 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 DOK1Q99704 481 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 TPT1P8Q9HAU6 139 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 AKIP1Q9NQ31 210 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 TMEM30AQ9NV96 361 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZFP37Q9Y6Q3 630 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 ANXA4P09525 319 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 CYP2A7P20853 494 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 RPL9P32969 192 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 ATP5C1P36542 298 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 EIF2DP41214 584 aaKnown RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 ATN1P54259 1190 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 MCCD1P59942 119 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 IFITM3Q01628 133 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 SNAPC1Q16533 368 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 BTBD16Q32M84 506 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 LRIT3Q3SXY7 679 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZNF362Q5T0B9 420 aaPredicted RBP10.73□□□□□ -0.69
CLN3-244ENST00000636147 ATAD3CQ5T2N8 411 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 TMEM179BQ7Z7N9 219 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 LRRC17Q8N6Y2 441 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 UXS1Q8NBZ7 420 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 IKZF5Q9H5V7 419 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 ZFYVE1Q9HBF4 777 aa10.73□□□□□ -0.69
CLN3-244ENST00000636147 THG1LQ9NWX6 298 aaKnown RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms