RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 SUCLA2Q9P2R7 463 aaPredicted RBP1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 CACNG4Q9UBN1 327 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 DNAJB4Q9UDY4 337 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 TBC1D29Q9UFV1 150 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 CHORDC1Q9UHD1 332 aaPredicted RBP1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 AMACRQ9UHK6 382 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 PRO0461Q9UI25 63 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 FBXO2Q9UK22 296 aaPredicted RBP1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 PLAGL1Q9UM63 463 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 GPR34Q9UPC5 381 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 TNNQ9UQP3 1299 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 MAGED1Q9Y5V3 778 aaPredicted RBP1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 PRSS21Q9Y6M0 314 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 SCN10AQ9Y5Y9 1956 aa1.01□□□□□ -2.25
SMARCB1-209ENST00000635578 ZNF609O15014 1411 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ATG2BQ96BY7 2078 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 RNF123Q5XPI4 1314 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TTC21BQ7Z4L5 1316 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 GOLGB1Q14789 3259 aaKnown RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 GREB1Q4ZG55 1949 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 IGLV9-49A0A0B4J1Y8 123 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TEX13DA0A0J9YY54 714 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 A0A1W2PP11 408 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 hCG_1809904A0A1W2PP81 198 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 A0A1W2PPE2 198 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 A0A1W2PR64 198 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 OR2A25A4D2G3 310 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 CTAGE9A4FU28 777 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TMEM8BA6NDV4 472 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 C5orf60A6NFR6 353 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 A8MZ25 164 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 E9PI62 339 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 F5H0A9 414 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 TO15178 435 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 EPHB6O15197 1021 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PRKNO60260 465 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 GJB3O75712 270 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 CDC123O75794 336 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 BEST1O76090 585 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 CSPG5O95196 566 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 NGFP01138 241 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 EDN1P05305 212 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ABCB1P08183 1280 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 PATE4P0C8F1 98 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 CTAGE8P0CG41 777 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PRSS56P0CW18 603 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 DNAH10OSP0CZ25 163 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 IGHV4-38-2P0DP08 117 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PRKAR1AP10644 381 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PAX1P15863 534 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PFKFB1P16118 471 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PORP16435 677 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 PTPN3P26045 913 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ACADLP28330 430 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 DCTP40126 519 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 MNDAP41218 407 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 NKX2-1P43699 371 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 TNNT2P45379 298 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 CAPZA2P47755 286 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 SLC6A12P48065 614 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 SLC9A3P48764 834 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ZNF75DP51815 510 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PSMC6P62333 389 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 IRX1P78414 480 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 CALD1Q05682 793 aaKnown RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 LGALS3BPQ08380 585 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 SPOCK1Q08629 439 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 GAGE2BQ13066 116 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 AIMP2Q13155 320 aaKnown RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 SQLEQ14534 574 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TMEM187Q14656 261 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 MELKQ14680 651 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 RALBP1Q15311 655 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 MAPRE1Q15691 268 aaKnown RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 SNAPC1Q16533 368 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 NTRK2Q16620 822 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 SGSM1Q2NKQ1 1148 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 KIAA1644Q3SXP7 199 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 DUSP28Q4G0W2 176 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 GAGE2EQ4V326 116 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ZC2HC1CQ53FD0 456 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 PHLDA2Q53GA4 152 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 MDH1BQ5I0G3 518 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 PLEKHS1Q5SXH7 462 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 HYIQ5T013 277 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 LCN1P1Q5VSP4 162 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 KRT39Q6A163 491 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 DHRS7BQ6IAN0 325 aaPredicted RBP1□□□□□ -2.25
SMARCB1-209ENST00000635578 TMEM211Q6ICI0 200 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 LCN10Q6JVE6 187 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 GAGE2AQ6NT46 116 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 FIGLAQ6QHK4 219 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ZBTB49Q6ZSB9 765 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TMPRSS11FQ6ZWK6 438 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 Q75L30 129 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 ARHGAP22Q7Z5H3 698 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TSPAN33Q86UF1 283 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 RTN4RL2Q86UN3 420 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 TMEM139Q8IV31 216 aa1□□□□□ -2.25
SMARCB1-209ENST00000635578 LINC00346Q8IVM7 164 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms