RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ADORA3P0DMS8 318 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CKBP12277 381 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NCF1P14598 390 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 C21orf33P30042 268 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 GRK5P34947 590 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 PLIN5Q00G26 463 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CD83Q01151 205 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CSTF3Q12996 717 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CAMK2GQ13555 558 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 EFR3AQ14156 821 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 AP5B1Q2VPB7 878 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FAHD1Q6P587 224 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 HDDC2Q7Z4H3 204 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ZSWIM9Q86XI8 627 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CALHM3Q86XJ0 350 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 CCDC71Q8IV32 467 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 DEPDC4Q8N2C3 294 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NKAPQ8N5F7 415 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NETO1Q8TDF5 533 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ASB15Q8WXK1 588 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 RNF34Q969K3 372 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FUBP1Q96AE4 644 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ACAT2Q9BWD1 397 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NXF3Q9H4D5 531 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 RNF121Q9H920 327 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 TLR6Q9Y2C9 796 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SNX10Q9Y5X0 201 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 A0A0U1RQS6 177 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SLC35F4A4IF30 521 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 E9PQ18 207 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 PIRO00625 290 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 PER2O15055 1255 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 RGS5O15539 181 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FABP3P05413 133 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 WARSP23381 471 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 TAF6P49848 677 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ARSDP51689 593 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ACVR1Q04771 509 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 TSNQ15631 228 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FAM174BQ3ZCQ3 159 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SV2CQ496J9 727 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 NOMO2Q5JPE7 1267 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FAM205BPQ63HN1 556 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 LETMD1Q6P1Q0 360 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FAM171BQ6P995 826 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 IL27RAQ6UWB1 636 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 LIMS2Q7Z4I7 341 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 STX19Q8N4C7 294 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FBXL6Q8N531 539 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 LRRC20Q8TCA0 184 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 METTL6Q8TCB7 284 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 IMP4Q96G21 291 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 OSMRQ99650 979 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 KCNS3Q9BQ31 491 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 MED10Q9BTT4 135 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 GTPBP2Q9BX10 602 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FAM83DQ9H4H8 585 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 REEP1Q9H902 201 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 ING3Q9NXR8 418 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SLC25A37Q9NYZ2 338 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 FBXO9Q9UK97 447 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 IKZF3Q9UKT9 509 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 SAMHD1Q9Y3Z3 626 aaKnown RBP10.52□□□□□ -0.73
UPF3A-212ENST00000619079 V9GYH0 126 aa10.52□□□□□ -0.73
UPF3A-212ENST00000619079 RALGAPA2Q2PPJ7 1873 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 A0A1W2PQ09 198 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 WNT9AO14904 365 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 BET1O15155 118 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 VPS26AO75436 327 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 OR2B3O76000 313 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 BEST1O76090 585 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 RHOBTB1O94844 696 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 PGRP06401 933 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SELPP16109 830 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 CPN2P22792 545 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SLC9A3P48764 834 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 MRPS6P82932 125 aaKnown RBP10.51□□□□□ -0.73
UPF3A-212ENST00000619079 RUNX1T1Q06455 604 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 ABHD18Q0P651 414 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 HYAL2Q12891 473 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 QPRTQ15274 297 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 C10orf62Q5T681 223 aaPredicted RBP10.51□□□□□ -0.73
UPF3A-212ENST00000619079 CACHD1Q5VU97 1274 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 C19orf48Q6RUI8 117 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 MSRB3Q8IXL7 192 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 TRIM43Q96BQ3 446 aaPredicted RBP10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SCLYQ96I15 445 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 BARD1Q99728 777 aaKnown RBP10.51□□□□□ -0.73
UPF3A-212ENST00000619079 BBS2Q9BXC9 721 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 UCK2Q9BZX2 261 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 DPY30Q9C005 99 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SLC39A8Q9C0K1 460 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SRRQ9GZT4 340 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 OSER1Q9NX31 292 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 GALPQ9UBC7 116 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 RABL2AQ9UBK7 228 aaPredicted RBP10.51□□□□□ -0.73
UPF3A-212ENST00000619079 RPS6KA6Q9UK32 745 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 TBX21Q9UL17 535 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 MAPRE3Q9UPY8 281 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms