RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KLHL42Q9P2K6 505 aa18.13■□□□□ 0.49
CDX1-202ENST00000616154 NXT1Q9UKK6 140 aaKnown RBP18.13■□□□□ 0.49
CDX1-202ENST00000616154 SLC5A6Q9Y289 635 aa18.13■□□□□ 0.49
CDX1-202ENST00000616154 HS3ST3B1Q9Y662 390 aa18.13■□□□□ 0.49
CDX1-202ENST00000616154 TARM1B6A8C7 271 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 GOLGA8MH3BSY2 632 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 MCM3P25205 808 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 GRIA3P42263 894 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 TERF1P54274 439 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 PPP1R7Q15435 360 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 DUPD1Q68J44 220 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 C8orf74Q6P047 294 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 TTC23LQ6PF05 361 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 IGFL2Q6UWQ7 119 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 OTUD6BQ8N6M0 293 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 HMGCLL1Q8TB92 370 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 PPP4R1Q8TF05 950 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.12■□□□□ 0.49
CDX1-202ENST00000616154 ERP44Q9BS26 406 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 IL1RAPL1Q9NZN1 696 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 NTNG1Q9Y2I2 539 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 MED16Q9Y2X0 877 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 KLK4Q9Y5K2 254 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 FAM169AQ9Y6X4 670 aa18.12■□□□□ 0.49
CDX1-202ENST00000616154 DIDO1Q9BTC0 2240 aaKnown RBP18.11■□□□□ 0.49
CDX1-202ENST00000616154 SRPX2O60687 465 aaPredicted RBP18.11■□□□□ 0.49
CDX1-202ENST00000616154 NIPSNAP2O75323 286 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 ALOX12BO75342 701 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 MATN4O95460 622 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 C1orf105O95561 183 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 CLDN1O95832 211 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 PKMP14618 531 aaKnown RBP18.11■□□□□ 0.49
CDX1-202ENST00000616154 FMO4P31512 558 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 GLRBP48167 497 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 ELOAQ14241 798 aaKnown RBP18.11■□□□□ 0.49
CDX1-202ENST00000616154 FAM214AQ32MH5 1076 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 ZNF470Q6ECI4 717 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 KIRREL2Q6UWL6 708 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 PCGF5Q86SE9 256 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 GSDMBQ8TAX9 411 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 C5orf34Q96MH7 638 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 TRIM51Q9BSJ1 452 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 AGPAT4Q9NRZ5 378 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 SEMA3GQ9NS98 782 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 CTSFQ9UBX1 484 aa18.11■□□□□ 0.49
CDX1-202ENST00000616154 NOVA2Q9UNW9 492 aaKnown RBP18.11■□□□□ 0.49
CDX1-202ENST00000616154 CRYBG3Q68DQ2 2970 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 SVILO95425 2214 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CREBBPQ92793 2442 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 VSTM2BA6NLU5 285 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CTSVO60911 334 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CCNFP41002 786 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 BDKRB1P46663 353 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 HIF1AQ16665 826 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 LONRF1Q17RB8 773 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 TUBB8Q3ZCM7 444 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 AGAP7PQ5VUJ5 663 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 IRAK1BP1Q5VVH5 260 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 ZGRF1Q86YA3 2104 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 RAB42Q8N4Z0 105 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 ST6GALNAC3Q8NDV1 305 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CALML6Q8TD86 181 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 KCNJ9Q92806 393 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 VPS50Q96JG6 964 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 AGAP4Q96P64 663 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 NAT9Q9BTE0 207 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 SOX17Q9H6I2 414 aaPredicted RBP18.1■□□□□ 0.49
CDX1-202ENST00000616154 ASIC3Q9UHC3 531 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 DMGDHQ9UI17 866 aaKnown RBP18.1■□□□□ 0.49
CDX1-202ENST00000616154 CRYL1Q9Y2S2 319 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CSAG2Q9Y5P2 127 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 NFS1Q9Y697 457 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 CELSR2Q9HCU4 2923 aa18.1■□□□□ 0.49
CDX1-202ENST00000616154 HEATR5BQ9P2D3 2071 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 SMAPO00193 183 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 TP73O15350 636 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 TTC4O95801 387 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 ERGP11308 486 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 PGAM1P18669 254 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 TSFMP43897 325 aaKnown RBP18.09■□□□□ 0.49
CDX1-202ENST00000616154 OR1D4P47884 311 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 CLCN7P51798 805 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 VSX2P58304 361 aaPredicted RBP18.09■□□□□ 0.49
CDX1-202ENST00000616154 MRPS25P82663 173 aaKnown RBP18.09■□□□□ 0.49
CDX1-202ENST00000616154 RBBP7Q16576 425 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 CCSMST1Q4G0I0 132 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 SHISA6Q6ZSJ9 500 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 NEK10Q6ZWH5 1172 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 DENND6AQ8IWF6 608 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 METTL27Q8N6F8 245 aaPredicted RBP18.09■□□□□ 0.49
CDX1-202ENST00000616154 OR2L3Q8NG85 312 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 OR11G2Q8NGC1 345 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 LHPPQ9H008 270 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 RAB17Q9H0T7 212 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 MAD1L1Q9Y6D9 718 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 COMMD10Q9Y6G5 202 aa18.09■□□□□ 0.49
CDX1-202ENST00000616154 HYKKA2RU49 373 aa18.08■□□□□ 0.49
CDX1-202ENST00000616154 PSMB5P28074 263 aa18.08■□□□□ 0.49
CDX1-202ENST00000616154 SLC1A2P43004 574 aa18.08■□□□□ 0.49
CDX1-202ENST00000616154 CBLBQ13191 982 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms