RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 DLGAP3O95886 979 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 COL6A2P12110 1019 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 RASA2Q15283 850 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 C18orf21Q32NC0 220 aaPredicted RBP15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 ZC3H12BQ5HYM0 836 aaKnown RBP15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 KLC3Q6P597 504 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 PAQR7Q86WK9 346 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 DTX1Q86Y01 620 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 PDPRQ8NCN5 879 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 OR2W6PQ8NHA6 318 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 N4BP2L2Q92802 583 aaPredicted RBP15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 EXT2Q93063 718 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 CABS1Q96KC9 395 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 HAUS8Q9BT25 410 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF358Q9NW07 568 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 CD274Q9NZQ7 290 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 ZMIZ1Q9ULJ6 1067 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 SNX7Q9UNH6 387 aa15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 ANKRD11Q6UB99 2663 aaPredicted RBP15.88■□□□□ 0.13
CCDC28A-202ENST00000611852 SMIM23A6NLE4 172 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 H7BY64 318 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 TAPBPO15533 448 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 SCRG1O75711 98 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 KIAA0754O94854 1291 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 CTSBP07858 339 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 LIPCP11150 499 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 MTHFD2P13995 350 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 HRH2P25021 359 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 GGT5P36269 586 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 GDF5P43026 501 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 SLC6A12P48065 614 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 ITGA1P56199 1179 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 PRAMEF17Q5VTA0 474 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 SULT1C3Q6IMI6 304 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 FBXO42Q6P3S6 717 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 RNF44Q7L0R7 432 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 C17orf64Q86WR6 236 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM126BQ8IUX1 230 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 MCATQ8IVS2 390 aaKnown RBP15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 KLHDC8AQ8IYD2 350 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 TCAIMQ8N3R3 496 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 KCNE4Q8WWG9 221 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 RNF31Q96EP0 1072 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 NAF1Q96HR8 494 aaKnown RBP15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 PRAP1Q96NZ9 151 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM79Q9BSE2 394 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 TMEM184CQ9NVA4 438 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 NUDT4Q9NZJ9 180 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 PTBP2Q9UKA9 531 aaKnown RBP15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 SLC22A14Q9Y267 594 aa15.87■□□□□ 0.13
CCDC28A-202ENST00000611852 A0A0J9YVX5 310 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 SYCE1LA8MT33 242 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 SUPT3HB4E1H0 165 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 UBXN8O00124 270 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 CDH16O75309 829 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 SUPT3HO75486 399 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 OR2B3O76000 313 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 RELAQ04206 551 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 CLN3Q13286 438 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 TGIF1Q15583 401 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 TSNAXIP1Q2TAA8 658 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 TECRLQ5HYJ1 363 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 TIPARPQ7Z3E1 657 aaKnown RBP15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 ADCK2Q7Z695 626 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 THOC6Q86W42 341 aaKnown RBP15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 GPR135Q8IZ08 494 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 CYP4X1Q8N118 509 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 DCBLD2Q96PD2 775 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 ZFYVE21Q9BQ24 234 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 SPRTNQ9H040 489 aaPredicted RBP15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 PCMTD2Q9NV79 361 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 WWOXQ9NZC7 414 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 PCDHB3Q9Y5E6 796 aa15.86■□□□□ 0.13
CCDC28A-202ENST00000611852 TEX51A0A1B0GUA7 166 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 E7EQ34 232 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 IPO13O94829 963 aaKnown RBP15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 S100BP04271 92 aaPredicted RBP15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 NTRK1P04629 796 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 CDH1P12830 882 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 EZRP15311 586 aaKnown RBP15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 FBXO48Q5FWF7 155 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 FRMPD2BQ6IN97 320 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 SLC38A9Q8NBW4 561 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 ABHD11Q8NFV4 315 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 ACMSDQ8TDX5 336 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 NEIL2Q969S2 332 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 ZNF285Q96NJ3 590 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 SELENOSQ9BQE4 189 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 DPH1Q9BZG8 443 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 SYNPO2LQ9H987 977 aa15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 CNOT10Q9H9A5 744 aaKnown RBP15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 ARGLU1Q9NWB6 273 aaPredicted RBP15.85■□□□□ 0.13
CCDC28A-202ENST00000611852 A0A087WV48 116 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 LOC105369274A0A096LPK9 316 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 LOC102723532A0A0G2JNH3 316 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 A0A1W2PPM1 405 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 FOXO6A8MYZ6 492 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 GOLGA8RI6L899 631 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 MAP2K7O14733 419 aa15.84■□□□□ 0.13
CCDC28A-202ENST00000611852 HAT1O14929 419 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms