RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 C1orf50Q9BV19 199 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 SLC25A23Q9BV35 468 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 BRF2Q9HAW0 419 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 ASIC5Q9NY37 505 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 ZIM2Q9NZV7 527 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 ZNF624Q9P2J8 865 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 KLF15Q9UIH9 416 aa17.04■□□□□ 0.32
SHKBP1-224ENST00000600718 ATP6V1G2O95670 118 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 PCSK2P16519 638 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 SLBPQ14493 270 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 TCEA2Q15560 299 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 LAS2Q8IYD9 372 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 ARHGAP24Q8N264 748 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 TSPEARQ8WU66 669 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 EDAQ92838 391 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 UTP4Q969X6 686 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 MCUR1Q96AQ8 359 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 HSPA12BQ96MM6 686 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 TCEAL2Q9H3H9 227 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 MMADHCQ9H3L0 296 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 PELI2Q9HAT8 420 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 SPATA6Q9NWH7 488 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 TAC3Q9UHF0 121 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 ICKQ9UPZ9 632 aa17.03■□□□□ 0.32
SHKBP1-224ENST00000600718 AIM2O14862 343 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 SLC22A3O75751 556 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 WNT1P04628 370 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 CDH1P12830 882 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 MAOBP27338 520 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 SLC19A1P41440 591 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 RPL38P63173 70 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 ZNF542PQ5EBM4 170 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 IYDQ6PHW0 289 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 OR9I1Q8NGQ6 314 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 ZFPM2Q8WW38 1151 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 NRTNQ99748 197 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 MRPL1Q9BYD6 325 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 DUSP15Q9H1R2 295 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 XKR8Q9H6D3 395 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 TAAR2Q9P1P5 351 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 PCDHB11Q9Y5F2 797 aa17.02■□□□□ 0.32
SHKBP1-224ENST00000600718 OR5K4A6NMS3 321 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 TLR4O00206 839 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 PCNAP12004 261 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 BCKDHBP21953 392 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 CXCR2P25025 360 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 SHMT2P34897 504 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 PGM1P36871 562 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 NME5P56597 212 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 SLC25A3Q00325 362 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 KIAA0040Q15053 153 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 CACHD1Q5VU97 1274 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 CYP20A1Q6UW02 462 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 KRT78Q8N1N4 520 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 KYQ8NBH2 561 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 ABHD11Q8NFV4 315 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 DNASE2BQ8WZ79 361 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 RCN3Q96D15 328 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 METTL2AQ96IZ6 378 aaKnown RBP17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 ACAT2Q9BWD1 397 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 MIR1-1HGQ9H1L0 117 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 TM9SF3Q9HD45 589 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 NDE1Q9NXR1 346 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 VPS29Q9UBQ0 182 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 TMED5Q9Y3A6 229 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 TSC22D4Q9Y3Q8 395 aa17.02■□□□□ 0.31
SHKBP1-224ENST00000600718 PRAMEF33A0A0G2JMD5 474 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 PIPSLA2A3N6 862 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 FOXE1O00358 373 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 PDGFBP01127 241 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 G6PDP11413 515 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 JUNDP17535 347 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 ITGAXP20702 1163 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 DMWDQ09019 674 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 BLOC1S3Q6QNY0 202 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 TAF8Q7Z7C8 310 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 FAM129CQ86XR2 697 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 HUS1BQ8NHY5 278 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 C1orf216Q8TAB5 229 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 MTERF1Q99551 399 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 PITHD1Q9GZP4 211 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 OR6C2Q9NZP2 312 aa17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 POLR3HQ9Y535 204 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-224ENST00000600718 TRBV23OR9-2A0A075B6M9 112 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 BBIP1A8MTZ0 92 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 NRP2O60462 931 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 CSF2P04141 144 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 ACPPP15309 386 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 XRCC1P18887 633 aaPredicted RBP17■□□□□ 0.31
SHKBP1-224ENST00000600718 MAPK1P28482 360 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 NUDT2P50583 147 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 CCR8P51685 355 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 UFM1P61960 85 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 PRDX1Q06830 199 aaKnown RBP17■□□□□ 0.31
SHKBP1-224ENST00000600718 ART3Q13508 389 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 DDX39BQ13838 428 aaKnown RBP17■□□□□ 0.31
SHKBP1-224ENST00000600718 MMEL1Q495T6 779 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 C16orf89Q6UX73 402 aa17■□□□□ 0.31
SHKBP1-224ENST00000600718 AMIGO1Q86WK6 493 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms