RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 F8A1P23610 371 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 UBAP2LQ14157 1087 aaKnown RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 ZKSCAN8Q15776 578 aaPredicted RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 PHKG1Q16816 387 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 PPP1R3AQ16821 1122 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 TCTE1Q5JU00 501 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 GRTP1Q5TC63 336 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 YOD1Q5VVQ6 348 aaPredicted RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 PAQR7Q86WK9 346 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 MCATQ8IVS2 390 aaKnown RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 CEP97Q8IW35 865 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 FBF1Q8TES7 1133 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 CT55Q8WUE5 264 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 STARD8Q92502 1023 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 CLIP3Q96DZ5 547 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 HIST1H2AHQ96KK5 128 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 CATSPER2Q96P56 530 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 FMO2Q99518 471 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 HIST1H2AJQ99878 128 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 H2AFJQ9BTM1 129 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 DPH7Q9BTV6 452 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 SPRTNQ9H040 489 aaPredicted RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 PCBD2Q9H0N5 130 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 MRPS30Q9NP92 439 aaKnown RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 CCDC177Q9NQR7 707 aaPredicted RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 WDR70Q9NW82 654 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 UTP6Q9NYH9 597 aaKnown RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 TAC3Q9UHF0 121 aa15.51■□□□□ 0.07
LSM4-206ENST00000600289 MTO1Q9Y2Z2 717 aaKnown RBP15.51■□□□□ 0.07
LSM4-206ENST00000600289 IGKV1-8A0A0C4DH67 115 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 CTSVO60911 334 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 PIAS1O75925 651 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 TCN2P20062 427 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 HRH2P25021 359 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 PHBP35232 272 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 SPRP35270 261 aaPredicted RBP15.5■□□□□ 0.07
LSM4-206ENST00000600289 PGGT1BP53609 377 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 SLC12A2P55011 1212 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 TBPL1P62380 186 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 CDKL1Q00532 357 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 PRAMEF17Q5VTA0 474 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 AGTRAPQ6RW13 159 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 ATG14Q6ZNE5 492 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 PPFIBP2Q8ND30 876 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 C17orf62Q9BQA9 187 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 PLCD4Q9BRC7 762 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 ACAT2Q9BWD1 397 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 SGPP1Q9BX95 441 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 TRIM54Q9BYV2 358 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 L2HGDHQ9H9P8 463 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 GPAMQ9HCL2 828 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 NINJ2Q9NZG7 142 aa15.5■□□□□ 0.07
LSM4-206ENST00000600289 ITPR2Q14571 2701 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 PABPN1LA6NDY0 278 aaKnown RBP15.49■□□□□ 0.07
LSM4-206ENST00000600289 SUV39H1O43463 412 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ONECUT2O95948 504 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 CAPN1P07384 714 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 CTSBP07858 339 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 EZRP15311 586 aaKnown RBP15.49■□□□□ 0.07
LSM4-206ENST00000600289 STMN1P16949 149 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ARSFP54793 590 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 EMP3P54852 163 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 YBX1P67809 324 aaKnown RBP15.49■□□□□ 0.07
LSM4-206ENST00000600289 CDC20Q12834 499 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ZNF460Q14592 562 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 PRAMEF13Q5VWM6 474 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 FAM198BQ6UWH4 519 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 LCTLQ6UWM7 567 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ADAMTSL2Q86TH1 951 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 CTAGE3PQ8IX95 158 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 PPM1NQ8N819 430 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ANKRD49Q8WVL7 239 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ATL1Q8WXF7 558 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 MR1Q95460 341 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 FBXL8Q96CD0 374 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 RNF31Q96EP0 1072 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 GBP5Q96PP8 586 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ZFYVE21Q9BQ24 234 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 SELENOSQ9BQE4 189 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 NLNQ9BYT8 704 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 SLC7A5P2Q9GIP4 190 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 DERL2Q9GZP9 239 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 CHST8Q9H2A9 424 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ACSS3Q9H6R3 686 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 AKIRIN1Q9H9L7 192 aaPredicted RBP15.49■□□□□ 0.07
LSM4-206ENST00000600289 STARD5Q9NSY2 213 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 ARL15Q9NXU5 204 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 IKZF3Q9UKT9 509 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 SNX7Q9UNH6 387 aa15.49■□□□□ 0.07
LSM4-206ENST00000600289 CLEC18AA5D8T8 446 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 CREG1O75629 220 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 AGXTP21549 392 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 SAT1P21673 171 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 PTPN4P29074 926 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 RPS15P62841 145 aaKnown RBP15.48■□□□□ 0.07
LSM4-206ENST00000600289 USP10Q14694 798 aaKnown RBP15.48■□□□□ 0.07
LSM4-206ENST00000600289 GRM7Q14831 915 aa15.48■□□□□ 0.07
LSM4-206ENST00000600289 ZXDCQ2QGD7 858 aaPredicted RBP15.48■□□□□ 0.07
LSM4-206ENST00000600289 FAM199XQ6PEV8 388 aaPredicted RBP15.48■□□□□ 0.07
LSM4-206ENST00000600289 CLEC18BQ6UXF7 455 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms