RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NOBOXO60393 691 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 SLC16A8O95907 504 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 MTHFD2P13995 350 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 EEF1DP29692 281 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 SHMT2P34897 504 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 MDH1P40925 334 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 DUSP3P51452 185 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 PNLIPRP1P54315 467 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 MAZP56270 477 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 DNAJB13P59910 316 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 NAA20P61599 178 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 HERVK_113P63132 956 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 GUCY1A3Q02108 690 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 HHEXQ03014 270 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ARHGAP19Q14CB8 494 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 PDK4Q16654 411 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ISXQ2M1V0 245 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 CCSMST1Q4G0I0 132 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ANKS6Q68DC2 871 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ZCCHC8Q6NZY4 707 aaKnown RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 SYTL1Q8IYJ3 562 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 CCNYL1Q8N7R7 359 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ARL10Q8N8L6 244 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 OR52E1Q8NGJ3 308 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 RAB3IL1Q8TBN0 382 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 LRRC8CQ8TDW0 803 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 PPP4R1Q8TF05 950 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ZFPM2Q8WW38 1151 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 PATE1Q8WXA2 126 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 SH3KBP1Q96B97 665 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 RHBDF1Q96CC6 855 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 L3HYPDHQ96EM0 354 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 TMEM237Q96Q45 408 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ERVK-6Q9BXR3 956 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 STOX2Q9P2F5 926 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ZNF624Q9P2J8 865 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 PLAGL1Q9UM63 463 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 ANGPTL3Q9Y5C1 460 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 MED13Q9UHV7 2174 aa11.65□□□□□ -0.54
SHKBP1-213ENST00000597325 KRT87PA6NCN2 255 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CCNT2O60583 730 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 WDR47O94967 919 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SERPINE1P05121 402 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CKMT1AP12532 417 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 IMPDH1P20839 514 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 BGNP21810 368 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CCND1P24385 295 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 GRK2P25098 689 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 IMPA1P29218 277 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 PKLRP30613 574 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SLC19A1P41440 591 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 PIK3CGP48736 1102 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 HSPA7P48741 367 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 RAB28P51157 221 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 NAGLUP54802 743 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 UBE2IP63279 158 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 TSTA3Q13630 321 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 GPR18Q14330 331 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 C14orf28Q4W4Y0 310 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 ATG16L1Q676U5 607 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CAPN13Q6MZZ7 669 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 METTL2BQ6P1Q9 378 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 AGTRAPQ6RW13 159 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 LRRC70Q7Z2Q7 622 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SLC25A45Q8N413 288 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SNX31Q8N9S9 440 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 OR4C6Q8NH72 309 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 LCN9Q8WX39 176 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 MAGEB18Q96M61 343 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 TMEM79Q9BSE2 394 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CD244Q9BZW8 370 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SRMSQ9H3Y6 488 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 MANSC1Q9H8J5 431 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 SLC40A1Q9NP59 571 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 CCDC177Q9NQR7 707 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 EVA1BQ9NVM1 165 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 OPTCQ9UBM4 332 aa11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 PTBP2Q9UKA9 531 aaKnown RBP11.64□□□□□ -0.55
SHKBP1-213ENST00000597325 LY6G6EA0A0G2JKS1 128 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 RHPN2P1A8MT19 583 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 TMEM114B3SHH9 223 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 STK16O75716 305 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 SUPT7LO94864 414 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 SIX3O95343 332 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 HSPA4LO95757 839 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 GP1BAP07359 652 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 RPS17P08708 135 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 FGF3P11487 239 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 SERPINB5P36952 375 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 ARL1P40616 181 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 MLLT3P42568 568 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 FASLGP48023 281 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 PPM1FP49593 454 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 AGTR2P50052 363 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 GYS2P54840 703 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 TBPL1P62380 186 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 STX3Q13277 289 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 NAE1Q13564 534 aa11.63□□□□□ -0.55
SHKBP1-213ENST00000597325 PCBP2Q15366 365 aaKnown RBP eCLIP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms