RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TAOK1Q7L7X3 1001 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 TBC1D1Q86TI0 1168 aaPredicted RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 PAQR7Q86WK9 346 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 DSELQ8IZU8 1212 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 OR56A3Q8NH54 315 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 SLC44A1Q8WWI5 657 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIG3-213ENST00000590630 RNF31Q96EP0 1072 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CRELD1Q96HD1 420 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 SLC45A3Q96JT2 553 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 ZNF285Q96NJ3 590 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 ZFYVE21Q9BQ24 234 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 HAUS8Q9BT25 410 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 SPRTNQ9H040 489 aaPredicted RBP11.41□□□□□ -0.58
LIG3-213ENST00000590630 ATG10Q9H0Y0 220 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 ABCF3Q9NUQ8 709 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 IRAK4Q9NWZ3 460 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 KCND3Q9UK17 655 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CROTQ9UKG9 612 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 IKZF3Q9UKT9 509 aa11.41□□□□□ -0.58
LIG3-213ENST00000590630 CCDC88CQ9P219 2028 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 HMX2A2RU54 273 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 FITM1A5D6W6 292 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 ZNF891A8MT65 544 aaPredicted RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 TERTO14746 1132 aaKnown RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 ANXA5P08758 320 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 CD1DP15813 335 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 TCN2P20062 427 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 CNTFP26441 200 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 SERPINB8P50452 374 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 SERPINB9P50453 376 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 PMS2P54278 862 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 ARSFP54793 590 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 YBX1P67809 324 aaKnown RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 MC1RQ01726 317 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 GRM7Q14831 915 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 CRTC2Q53ET0 693 aaPredicted RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 CDKL4Q5MAI5 379 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 YOD1Q5VVQ6 348 aaPredicted RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 LCTLQ6UWM7 567 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 CMC1Q7Z7K0 106 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 C17orf64Q86WR6 236 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 ZNF655Q8N720 491 aaPredicted RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 PROKR1Q8TCW9 393 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 MR1Q95460 341 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 KIAA1191Q96A73 305 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 MRRFQ96E11 262 aaKnown RBP11.4□□□□□ -0.58
LIG3-213ENST00000590630 PAFAH2Q99487 392 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 NDC1Q9BTX1 674 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 GPR87Q9BY21 358 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 TXLNGYQ9BZA5 131 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 TXLNGQ9NUQ3 528 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 PCMTD2Q9NV79 361 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 TMEM184CQ9NVA4 438 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 ZNF180Q9UJW8 692 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 ACOT9Q9Y305 439 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 PCDHGA6Q9Y5G7 932 aa11.4□□□□□ -0.58
LIG3-213ENST00000590630 A0A087X1B8 175 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 A0A0J9YVX5 310 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 EXOC1LA0A1B0GW35 172 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CCDC189A1A4V9 331 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 RIPK2O43353 540 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 NRP2O60462 931 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 KRT38O76015 456 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CTSBP07858 339 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 LTA4HP09960 611 aaKnown RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 FAM153BP0C7A2 387 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 NPPBP16860 134 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 WT1P19544 449 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 AGXTP21549 392 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 MSH2P43246 934 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 GCGRP47871 477 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CSRP3P50461 194 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 VSX2P58304 361 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 DNASE1L3Q13609 305 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 BMPR2Q13873 1038 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CSHL1Q14406 222 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 TGFBIQ15582 683 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 ZXDCQ2QGD7 858 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 FAM214AQ32MH5 1076 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 FAM153CQ494X1 144 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 TAF1BQ53T94 588 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 FBXO42Q6P3S6 717 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 ADCK2Q7Z695 626 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 GPSM1Q86YR5 675 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CNPY4Q8N129 248 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 TCAIMQ8N3R3 496 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 SPATA6LQ8N4H0 392 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CT55Q8WUE5 264 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 STARD8Q92502 1023 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 RERGQ96A58 199 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 PYCR2Q96C36 320 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 EGFL8Q99944 293 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 C17orf62Q9BQA9 187 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 NMRAL1Q9HBL8 299 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 SNX15Q9NRS6 342 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 CUEDC1Q9NWM3 386 aaPredicted RBP11.39□□□□□ -0.59
LIG3-213ENST00000590630 IL17BQ9UHF5 180 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 TLK1Q9UKI8 766 aa11.39□□□□□ -0.59
LIG3-213ENST00000590630 LOC105369274A0A096LPK9 316 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms