RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 VTNP04004 478 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 GP1BBP13224 206 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 HSD17B3P37058 310 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 LEPRP48357 1165 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 PAX9P55771 341 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 CLDN15P56746 228 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 DLK1P80370 383 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 MYL7Q01449 175 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 RASGEF1BQ0VAM2 473 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 TRAP1Q12931 704 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 HYAL4Q2M3T9 481 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 HLA-BQ31612 363 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 FIP1L1Q6UN15 594 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 ADCK2Q7Z695 626 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 KIF18AQ8NI77 898 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 APOBEC4Q8WW27 367 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF599Q96NL3 588 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 MAP3K3Q99759 626 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 NKX3-1Q99801 234 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 BAG1Q99933 345 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 GTPBP2Q9BX10 602 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 DGCR6LQ9BY27 220 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 FZD8Q9H461 694 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 FN3KQ9H479 309 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 ERAP1Q9NZ08 941 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 PPP1R3CQ9UQK1 317 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 SNED1Q8TER0 1413 aa3.95□□□□□ -1.78
SMCHD1-204ENST00000581226 IGLV7-46A0A075B6I9 117 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 NDUFAF8A1L188 74 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 SNURFLB1AK76 121 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 RECQL5O94762 991 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 CLDN1O95832 211 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 FDPSP14324 419 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 ACAT1P24752 427 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 CDC25CP30307 473 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 DNA2P51530 1060 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 ILF2Q12905 390 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 DRP2Q13474 957 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 E2F5Q15329 346 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 EXT1Q16394 746 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF74Q16587 644 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 GPR33Q49SQ1 333 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 WLSQ5T9L3 541 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 BSPRYQ5W0U4 402 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 ENPP7Q6UWV6 458 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 ERN2Q76MJ5 926 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 NME8Q8N427 588 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 SLC37A3Q8NCC5 494 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 OR6S1Q8NH40 331 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 METTL21AQ8WXB1 218 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 RMDN2Q96LZ7 410 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 FER1L6-AS2Q96M78 137 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 LPAR4Q99677 370 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 EGFL8Q99944 293 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 PIGQQ9BRB3 760 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 KATNB1Q9BVA0 655 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 AP1M1Q9BXS5 423 aa3.94□□□□□ -1.78
SMCHD1-204ENST00000581226 TRBV5-5A0A0J9YX44 114 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 C15orf61A6NNL5 157 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 DUS4LO95620 317 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 PRKAR1AP10644 381 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 DPEP1P16444 411 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 PTAFRP25105 342 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ALDH1B1P30837 517 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF41P51814 821 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF273Q14593 569 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 OPCMLQ14982 345 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 CTU2Q2VPK5 515 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 LACTB2Q53H82 288 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 LYSMD4Q5XG99 296 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF772Q68DY9 489 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 FBXL22Q6P050 247 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 CTR9Q6PD62 1173 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 TRIM65Q6PJ69 517 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 IL17RELQ6ZVW7 336 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 CCAR2Q8N163 923 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 IQUBQ8NA54 791 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF485Q8NCK3 441 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 Q8NFD4 153 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 MAPK15Q8TD08 544 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 TSACCQ96A04 125 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 SIPA1Q96FS4 1042 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF486Q96H40 463 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 SPATA33Q96N06 139 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 SYT11Q9BT88 431 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 MCRIP2Q9BUT9 160 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 SNX25Q9H3E2 840 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 PFDN4Q9NQP4 134 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 NRBP1Q9UHY1 535 aa3.93□□□□□ -1.78
SMCHD1-204ENST00000581226 A0A1B0GU03 582 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 H0YAE9 185 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 H7C0S8 307 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 TEX28O15482 410 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNF500O60304 480 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 MOCS3O95396 460 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 ATP1B1P05026 303 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 CYP2A7P20853 494 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 PSMA3P25788 255 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 MMP12P39900 470 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 OPRL1P41146 370 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms