RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CHMP4BQ9H444 224 aaKnown RBP4.61□□□□□ -1.67
NUP88-213ENST00000576862 BARHL2Q9NY43 387 aa4.61□□□□□ -1.67
NUP88-213ENST00000576862 SLC24A2Q9UI40 661 aa4.61□□□□□ -1.67
NUP88-213ENST00000576862 RNF150Q9ULK6 438 aa4.61□□□□□ -1.67
NUP88-213ENST00000576862 TMED3Q9Y3Q3 217 aa4.61□□□□□ -1.67
NUP88-213ENST00000576862 CYP11B2P19099 503 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 PTGER4P35408 488 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 HERV-K104P61576 105 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 IRX1P78414 480 aaPredicted RBP4.6□□□□□ -1.67
NUP88-213ENST00000576862 GCNT1Q02742 428 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 C9orf152Q5JTZ5 239 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 NAA16Q6N069 864 aaPredicted RBP4.6□□□□□ -1.67
NUP88-213ENST00000576862 C11orf63Q6NUN7 778 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 FBXL22Q6P050 247 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 RPAINQ86UA6 219 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 LMNTD2Q8IXW0 634 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 BMPERQ8N8U9 685 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 OR2T6Q8NHC8 308 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 PIGBQ92521 554 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 SUSD6Q92537 303 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 CDHR1Q96JP9 859 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 ZNF599Q96NL3 588 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 OPRPNQ99935 248 aaPredicted RBP4.6□□□□□ -1.67
NUP88-213ENST00000576862 MIS12Q9H081 205 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 KLHL8Q9P2G9 620 aaPredicted RBP4.6□□□□□ -1.67
NUP88-213ENST00000576862 STUB1Q9UNE7 303 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 USP47Q96K76 1375 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 RALGAPBQ86X10 1494 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 LMTK2Q8IWU2 1503 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 CFAP74Q9C0B2 1584 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 MAP3K4Q9Y6R4 1608 aa4.6□□□□□ -1.67
NUP88-213ENST00000576862 EDDM13A0A1B0GTR0 161 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 A0A1B0GU03 582 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 TRBC2A0A5B9 178 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 DEPDC5O75140 1603 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 TADA2AO75478 443 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 TRPM2O94759 1503 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 CDH3P22223 829 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 MC5RP33032 325 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 LUMP51884 338 aaPredicted RBP4.59□□□□□ -1.67
NUP88-213ENST00000576862 ITGA7Q13683 1181 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 HNRNPDQ14103 355 aaKnown RBP4.59□□□□□ -1.67
NUP88-213ENST00000576862 NPATQ14207 1427 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 KIF7Q2M1P5 1343 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 CRY2Q49AN0 593 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 XKR6Q5GH73 641 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 GPRASP1Q5JY77 1395 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 LACC1Q8IV20 430 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 NKAIN3Q8N8D7 197 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 OR5AP2Q8NGF4 316 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 POM121L2Q96KW2 1035 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 CCDC7Q96M83 1385 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 PIH1D3Q9NQM4 214 aaKnown RBP4.59□□□□□ -1.67
NUP88-213ENST00000576862 STK26Q9P289 416 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 HECW2Q9P2P5 1572 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 KIDINS220Q9ULH0 1771 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 GRID1Q9ULK0 1009 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 DIP2CQ9Y2E4 1556 aa4.59□□□□□ -1.67
NUP88-213ENST00000576862 ABCA6Q8N139 1617 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 ABCC3O15438 1527 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 EFCAB6Q5THR3 1501 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 ZMYM4Q5VZL5 1548 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 ROCK2O75116 1388 aaKnown RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 IGKV3D-15A0A087WSY6 115 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 C2orf81A6NN90 581 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 KRTAP16-1A8MUX0 517 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 SLCO2B1O94956 709 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 PSMA3P25788 255 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 PTPRCAPQ14761 206 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 CTU2Q2VPK5 515 aaKnown RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 CENPVQ7Z7K6 275 aaPredicted RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 MMD2Q8IY49 270 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 KCTD6Q8NC69 237 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 MAPK1IP1LQ8NDC0 245 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 PGAP3Q96FM1 320 aaPredicted RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 PIGQQ9BRB3 760 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 EGLN1Q9GZT9 426 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 P2RY12Q9H244 342 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 Q9H8V8 135 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 FAM207AQ9NSI2 230 aaPredicted RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 ZDHHC18Q9NUE0 388 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 WDR35Q9P2L0 1181 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 ASIC3Q9UHC3 531 aa4.58□□□□□ -1.68
NUP88-213ENST00000576862 ISY1Q9ULR0 285 aaKnown RBP4.58□□□□□ -1.68
NUP88-213ENST00000576862 RNF17Q9BXT8 1623 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 EIF2AK4Q9P2K8 1649 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 UGGT1Q9NYU2 1555 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 NOS1P29475 1434 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 A0A1W2PPK0 400 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 SYNDIG1LA6NDD5 238 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 P4HA2O15460 535 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 ARHGEF9O43307 516 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 CELF2O95319 508 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 RPL21P46778 160 aaKnown RBP4.57□□□□□ -1.68
NUP88-213ENST00000576862 CAPZA2P47755 286 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 SLC6A12P48065 614 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 LHX1P48742 406 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 PPP5CP53041 499 aa4.57□□□□□ -1.68
NUP88-213ENST00000576862 POLR2LP62875 67 aaKnown RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms