RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CD27P26842 260 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 MAT2AP31153 395 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 HOXA6P31267 233 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ACSL1P33121 698 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 SHMT2P34897 504 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 GRK3P35626 688 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ASMTP46597 345 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 RAB28P51157 221 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 HNRNPFP52597 415 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 ARFIP1P53367 373 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 FOXA1P55317 472 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 SRP54P61011 504 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 ELF3P78545 371 aaPredicted RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 TAP2Q03519 686 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ZP2Q05996 745 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 CUL3Q13618 768 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ABRAXAS2Q15018 415 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 CPSF6Q16630 551 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS39-213ENST00000570062 USP39Q53GS9 565 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 SPIN4Q56A73 249 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PRAMEF14Q5SWL7 426 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 THEMIS2Q5TEJ8 643 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PRAMEF13Q5VWM6 474 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 NXPE4Q6UWF7 544 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 Q6ZSR9 355 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 MSANTD1Q6ZTZ1 278 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 RPS27LQ71UM5 84 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 FAM124AQ86V42 546 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 C17orf64Q86WR6 236 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 SNX32Q86XE0 403 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 CACUL1Q86Y37 369 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 FBXW8Q8N3Y1 598 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 MFSD2AQ8NA29 543 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 TMEM145Q8NBT3 493 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 BMFQ96LC9 184 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PPP1R36Q96LQ0 422 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 QRFPRQ96P65 431 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 AIF1LQ9BQI0 150 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 THTPAQ9BU02 230 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 CADM1Q9BY67 442 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 GSDMCQ9BYG8 508 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 ATG10Q9H0Y0 220 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 KIR3DX1Q9H7L2 352 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 INTS7Q9NVH2 962 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 DNAAF2Q9NVR5 837 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 SIRT5Q9NXA8 310 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 OR6C2Q9NZP2 312 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 CCDC167Q9P0B6 97 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 MOSPD1Q9UJG1 213 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 LEF1Q9UJU2 399 aaPredicted RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 CA14Q9ULX7 337 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 RNF11Q9Y3C5 154 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PCDHB11Q9Y5F2 797 aa7.71□□□□□ -1.18
VPS39-213ENST00000570062 PRRC2BQ5JSZ5 2229 aaKnown RBP7.71□□□□□ -1.18
VPS39-213ENST00000570062 KIR2DS5A0A0G2JLQ3 304 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 A0A0G2JNG1 304 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CCDC154A6NI56 674 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 PRR19A6NJB7 356 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SHISA7A6NL88 538 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 METTL12A8MUP2 240 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ANKRD65E5RJM6 399 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KIR2DS3K7RE56 304 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ERVH48-1M5A8F1 160 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 AIM2O14862 343 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 FKBP6O75344 327 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 JUNP05412 331 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 IL9P15248 144 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 HOXB6P17509 224 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 PRPS1L1P21108 318 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ITPKAP23677 461 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 PRDX3P30048 256 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 CPOXP36551 454 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CXCL12P48061 93 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 NUDT2P50583 147 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 CCR8P51685 355 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 POLR2JP52435 117 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 TBPL1P62380 186 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KCNJ2P63252 427 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SRSF11Q05519 484 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 DOC2AQ14183 400 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 RCAN2Q14206 197 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KIR2DS5Q14953 304 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SNCBQ16143 134 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SPRED3Q2MJR0 410 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 SAMD4BQ5PRF9 694 aaKnown RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 IL23RQ5VWK5 629 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 TMEM198Q66K66 360 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ANO7Q6IWH7 933 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 AAGABQ6PD74 315 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 BNC2Q6ZN30 1099 aaPredicted RBP7.7□□□□□ -1.18
VPS39-213ENST00000570062 SLCO4C1Q6ZQN7 724 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 RINLQ6ZS11 566 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 Q6ZSR6 202 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 LAS2Q8IYD9 372 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 DSELQ8IZU8 1212 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 KIF2BQ8N4N8 673 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 MINDY1Q8N5J2 469 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 VPS37AQ8NEZ2 397 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 ABHD11Q8NFV4 315 aa7.7□□□□□ -1.18
VPS39-213ENST00000570062 OR2L8Q8NGY9 312 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms