RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PTGS2P35354 604 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 TFF3Q07654 80 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 MSLNQ13421 630 aaPredicted RBP15.32■□□□□ 0.04
CLK3-223ENST00000568488 MAPKAPK3Q16644 382 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 MEP1AQ16819 746 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 SYT16Q17RD7 645 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 SLC25A25Q6KCM7 469 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 BIVMQ86UB2 503 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 CD163Q86VB7 1156 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 CRLF3Q8IUI8 442 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 NAP1L5Q96NT1 182 aaPredicted RBP15.32■□□□□ 0.04
CLK3-223ENST00000568488 GORASP1Q9BQQ3 440 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 POLDIP3Q9BY77 421 aaKnown RBP15.32■□□□□ 0.04
CLK3-223ENST00000568488 GBA3Q9H227 469 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 C10orf88Q9H8K7 445 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 MKKSQ9NPJ1 570 aaPredicted RBP15.32■□□□□ 0.04
CLK3-223ENST00000568488 HCFC1P51610 2035 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 RPN2P04844 631 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 SP1P08047 785 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 PSMB5P28074 263 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 PTGER1P34995 402 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 ADAM8P78325 824 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 HSPA14Q0VDF9 509 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 GRB7Q14451 532 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 PRPSAP1Q14558 356 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 MFSD4BQ5TF39 518 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 CCDC71Q8IV32 467 aaPredicted RBP15.31■□□□□ 0.04
CLK3-223ENST00000568488 DCUN1D3Q8IWE4 304 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 MARVELD2Q8N4S9 558 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 FAM57AQ8TBR7 257 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 RND1Q92730 232 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 SYN2Q92777 582 aaPredicted RBP15.31■□□□□ 0.04
CLK3-223ENST00000568488 HDAC10Q969S8 669 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 TGIF2Q9GZN2 237 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 SLC24A3Q9HC58 644 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 DDX56Q9NY93 547 aaKnown RBP15.31■□□□□ 0.04
CLK3-223ENST00000568488 PLEKHA6Q9Y2H5 1048 aa15.31■□□□□ 0.04
CLK3-223ENST00000568488 AAR2Q9Y312 384 aaKnown RBP15.31■□□□□ 0.04
CLK3-223ENST00000568488 H0YGG7 62 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 SUN1O94901 812 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 SLC26A3P40879 764 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 EFNA3P52797 238 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 DGKQP52824 942 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 ARF3P61204 181 aaPredicted RBP15.3■□□□□ 0.04
CLK3-223ENST00000568488 SPARCL1Q14515 664 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 RNFT1Q5M7Z0 435 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 TMEM198Q66K66 360 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 ITPRIPL1Q6GPH6 555 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 VRK3Q8IV63 474 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 CCDC50Q8IVM0 306 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 ZC3H7AQ8IWR0 971 aaKnown RBP15.3■□□□□ 0.04
CLK3-223ENST00000568488 CLYBLQ8N0X4 340 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 CPSF7Q8N684 471 aaKnown RBP15.3■□□□□ 0.04
CLK3-223ENST00000568488 HORMAD2Q8N7B1 307 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 AMER3Q8N944 861 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 CDKN2AIPNLQ96HQ2 116 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 QKIQ96PU8 341 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLK3-223ENST00000568488 C19orf43Q9BQ61 176 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 NLE1Q9NVX2 485 aaPredicted RBP15.3■□□□□ 0.04
CLK3-223ENST00000568488 GNPTGQ9UJJ9 305 aa15.3■□□□□ 0.04
CLK3-223ENST00000568488 FLNAP21333 2647 aaKnown RBP15.3■□□□□ 0.04
CLK3-223ENST00000568488 A0A0A6YYC8 382 aaPredicted RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 A0A1B0GTH9 108 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 USP27XA6NNY8 438 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 GABRR3A8MPY1 467 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 H7C0C1 242 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 H7C0S8 307 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 I3L1I5 382 aaPredicted RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 PROM1O43490 865 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 MAN1A2O60476 641 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 CDC40O60508 579 aaKnown RBP eCLIP15.29■□□□□ 0.04
CLK3-223ENST00000568488 FKBP9O95302 570 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 PSMB4P28070 264 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 RBL1P28749 1068 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 ADSLP30566 484 aaPredicted RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 CDKN2BP42772 138 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 ATP5OP48047 213 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 MEOX1P50221 254 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 MAT1AQ00266 395 aaKnown RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 ITIH4Q14624 930 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 PRTGQ2VWP7 1150 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 FIGNQ5HY92 759 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 LRRC38Q5VT99 294 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 PLAG1Q6DJT9 500 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 H3F3CQ6NXT2 135 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 FBXO42Q6P3S6 717 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 LRRC8BQ6P9F7 803 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 TTC23LQ6PF05 361 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 RBM43Q6ZSC3 357 aaKnown RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 LANCL3Q6ZV70 420 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 RNF44Q7L0R7 432 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 CPEB2Q7Z5Q1 589 aaKnown RBP15.29■□□□□ 0.04
CLK3-223ENST00000568488 SLC22A15Q8IZD6 547 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 OR2L3Q8NG85 312 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 SLC35G2Q8TBE7 412 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 MVB12AQ96EY5 273 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 ALS2CR12Q96Q35 445 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 NPAS2Q99743 824 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 ZFYVE21Q9BQ24 234 aa15.29■□□□□ 0.04
CLK3-223ENST00000568488 TBL1YQ9BQ87 522 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms