RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLC35E2BP0CK96 405 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 CD1DP15813 335 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 PSMB5P28074 263 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 IMPA1P29218 277 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 CASRP41180 1078 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 NAA25Q14CX7 972 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 IGFBP7Q16270 282 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 KLC3Q6P597 504 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 AGTRAPQ6RW13 159 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 MBOAT1Q6ZNC8 495 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 FAM20CQ8IXL6 584 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 D2HGDHQ8N465 521 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 BMPERQ8N8U9 685 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 TCTN2Q96GX1 697 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 TEFMQ96QE5 360 aaKnown RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 ZPBPQ9BS86 351 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 DDA1Q9BW61 102 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 ATG10Q9H0Y0 220 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 NMRAL1Q9HBL8 299 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 MRPS30Q9NP92 439 aaKnown RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 FBXO8Q9NRD0 319 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 SIDT1Q9NXL6 827 aaKnown RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 PSMC3IPQ9P2W1 217 aaPredicted RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 TAC3Q9UHF0 121 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 IKZF3Q9UKT9 509 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 RARRES3Q9UL19 164 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 RNF112Q9ULX5 631 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 BTRCQ9Y297 605 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 MAN2B2Q9Y2E5 1009 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 OARD1Q9Y530 152 aa16.59■□□□□ 0.25
CLN3-217ENST00000565354 RP1L1Q8IWN7 2480 aaPredicted RBP16.59■□□□□ 0.25
CLN3-217ENST00000565354 E7ENX8 843 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 WISP3O95389 354 aaPredicted RBP16.58■□□□□ 0.24
CLN3-217ENST00000565354 C2P06681 752 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 FOLR1P15328 257 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 MAGP20916 626 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 CCND1P24385 295 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 SLC26A3P40879 764 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 ATP1A2P50993 1020 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 TBPL1P62380 186 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 TAP2Q03519 686 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 NAE1Q13564 534 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 FAM83EQ2M2I3 478 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 SBSNQ6UWP8 590 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 PPP1R3BQ86XI6 285 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 CNPY4Q8N129 248 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 FLVCR1-AS1Q8TAF5 88 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 EXT2Q93063 718 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 NKD1Q969G9 470 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 MTBPQ96DY7 904 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 EPB41L4BQ9H329 900 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 APMAPQ9HDC9 416 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 FGF21Q9NSA1 209 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 IRAK4Q9NWZ3 460 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 FETUBQ9UGM5 382 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 ANAPC2Q9UJX6 822 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 B3GALT1Q9Y5Z6 326 aa16.58■□□□□ 0.24
CLN3-217ENST00000565354 SPENQ96T58 3664 aaKnown RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 A0A1W2PPV9 198 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 HMX2A2RU54 273 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 NCF1BA6NI72 391 aaPredicted RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 SMIM23A6NLE4 172 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 NCF1CA8MVU1 366 aaPredicted RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 PRICKLE3O43900 615 aaPredicted RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 NCF1P14598 390 aaPredicted RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 TFEBP19484 476 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 HSD17B3P37058 310 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 IFFO1Q0D2I5 559 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 IL11RAQ14626 422 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 GPR19Q15760 415 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 PRAMEF13Q5VWM6 474 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 CAPN13Q6MZZ7 669 aaPredicted RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 FIGLAQ6QHK4 219 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 ADGRD1Q6QNK2 874 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 ADCK2Q7Z695 626 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 GPSM1Q86YR5 675 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 OR2L3Q8NG85 312 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 AENQ8WTP8 325 aaKnown RBP16.57■□□□□ 0.24
CLN3-217ENST00000565354 KCTD4Q8WVF5 259 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 CAVIN3Q969G5 261 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 FBXL8Q96CD0 374 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 UBXN10Q96LJ8 280 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 PSMG3-AS1Q96PY0 264 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 PCBD2Q9H0N5 130 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 PPCSQ9HAB8 311 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 CD274Q9NZQ7 290 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 TBK1Q9UHD2 729 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 KLHL20Q9Y2M5 609 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 PCDHGA3Q9Y5H0 932 aa16.57■□□□□ 0.24
CLN3-217ENST00000565354 CREBBPQ92793 2442 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 TMEM150CB9EJG8 249 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 ALDOAP04075 364 aaKnown RBP16.56■□□□□ 0.24
CLN3-217ENST00000565354 SHBGP04278 402 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 GMPRP36959 345 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 CCR10P46092 362 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 ABATP80404 500 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 CDKL1Q00532 357 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 IRF9Q00978 393 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 PPP1R3AQ16821 1122 aa16.56■□□□□ 0.24
CLN3-217ENST00000565354 DEFB110Q30KQ9 67 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms