RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 A8MUI8 341 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 FAM220BPB1ANY3 271 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3LB9A6J9 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 E7ENX8 843 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PRAMEF26H0Y7S4 382 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RNASET2O00584 256 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 RFXANKO14593 260 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 LINC01565O15544 149 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBX19O60806 448 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SCELO95171 688 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 EPN2O95208 641 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 KLF8O95600 359 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 PDYNP01213 254 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 IFNA14P01570 189 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RETP07949 1114 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3HP0C7X1 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 BCKDHAP12694 445 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 CAPN3P20807 821 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 FASP25445 335 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PBLDP30039 288 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 PRDX3P30048 256 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 TIA1P31483 386 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS39-204ENST00000561818 DIO3P55073 304 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TAP2Q03519 686 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RELAQ04206 551 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 KLC1Q07866 573 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 ABHD18Q0P651 414 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 CEACAM7Q14002 265 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 CCNIQ14094 377 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 DOC2AQ14183 400 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 ADGRE1Q14246 886 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 NFATC4Q14934 902 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 HEPACAMQ14CZ8 416 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 KIAA0040Q15053 153 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 IRF4Q15306 451 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TLR1Q15399 786 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 UAP1L1Q3KQV9 507 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 POM121L1PQ3SYA9 428 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 FAM174BQ3ZCQ3 159 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RFTN2Q52LD8 501 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 FAM98BQ52LJ0 330 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 C6orf10Q5SRN2 563 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TMTC4Q5T4D3 741 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3GQ6DHY5 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3CQ6IPX1 549 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 GPR153Q6NV75 609 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 NXPE4Q6UWF7 544 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TMIGD1Q6UXZ0 262 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 MBOAT1Q6ZNC8 495 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SLCO4C1Q6ZQN7 724 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 EP400NLQ6ZTU2 488 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RPS27LQ71UM5 84 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 TMPRSS11BQ86T26 416 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 VRK3Q8IV63 474 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SLC15A3Q8IY34 581 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SAMD14Q8IZD0 417 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D3Q8IZP1 549 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 LIX1Q8N485 282 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 TRPV3Q8NET8 790 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 OR7G3Q8NG95 312 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 OR2T11Q8NH01 316 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 ZNF480Q8WV37 535 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 FAM3CQ92520 227 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SH3KBP1Q96B97 665 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 THAP11Q96EK4 314 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 CHFRQ96EP1 664 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 NSMCE2Q96MF7 247 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RDH12Q96NR8 316 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 CDK15Q96Q40 435 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 OR52E6Q96RD3 313 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 BDH2Q9BUT1 245 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 C9orf16Q9BUW7 83 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PLA2G2FQ9BZM2 168 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 BHLHE41Q9C0J9 482 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 RHBGQ9H310 441 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 KIR3DX1Q9H7L2 352 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 FBRSL1Q9HCM7 1045 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 CD248Q9HCU0 757 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 INTS7Q9NVH2 962 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 BTNL2Q9UIR0 455 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 MCM8Q9UJA3 840 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 RPS6KA6Q9UK32 745 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PCOLCE2Q9UKZ9 415 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 SAMD4AQ9UPU9 718 aaKnown RBP7.27□□□□□ -1.25
VPS39-204ENST00000561818 BOLA1Q9Y3E2 137 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PCDHB11Q9Y5F2 797 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PCDHA9Q9Y5H5 950 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 ENTPD2Q9Y5L3 495 aa7.27□□□□□ -1.25
VPS39-204ENST00000561818 PRRC2BQ5JSZ5 2229 aaKnown RBP7.26□□□□□ -1.25
VPS39-204ENST00000561818 A0A0U1RQS6 177 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PRSS51A0A1B0GVH4 220 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PRORSD1PA6NEY8 169 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 E7EQ34 232 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 FXYD1O00168 92 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 PPP6CO00743 305 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 FFAR3O14843 346 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 ANKRD28O15084 1053 aa7.26□□□□□ -1.25
VPS39-204ENST00000561818 GSTA4O15217 222 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms