RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 RAB42Q8N4Z0 105 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 ACRBPQ8NEB7 543 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 MAGEC3Q8TD91 643 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 OR2A5Q96R48 311 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 PLCD4Q9BRC7 762 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 DPH7Q9BTV6 452 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 RUBCNLQ9H714 662 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 EIF2B3Q9NR50 452 aaKnown RBP15.62■□□□□ 0.09
CLN3-208ENST00000561505 GNPTGQ9UJJ9 305 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 PCDHGB6Q9Y5F9 930 aa15.62■□□□□ 0.09
CLN3-208ENST00000561505 DCHS2Q6V1P9 2916 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 CPAMD8Q8IZJ3 1885 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 ARHGAP10A1A4S6 786 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 KRT87PA6NCN2 255 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PRSS44E7EML9 344 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 MYO1CO00159 1063 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PRPF4O43172 522 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLN3-208ENST00000561505 IPO7O95373 1038 aaKnown RBP15.61■□□□□ 0.09
CLN3-208ENST00000561505 CYC1P08574 325 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 FBLP22087 321 aaKnown RBP15.61■□□□□ 0.09
CLN3-208ENST00000561505 PTGER4P35408 488 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 BDKRB1P46663 353 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 KCNK10P57789 538 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 ARG2P78540 354 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 FAM53BQ14153 422 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 FASTKQ14296 549 aaKnown RBP15.61■□□□□ 0.09
CLN3-208ENST00000561505 PCOLCEQ15113 449 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 TYSND1Q2T9J0 566 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PTRHD1Q6GMV3 140 aaKnown RBP15.61■□□□□ 0.09
CLN3-208ENST00000561505 OTOAQ7RTW8 1153 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 MOCOSQ96EN8 888 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 MKKSQ9NPJ1 570 aaPredicted RBP15.61■□□□□ 0.09
CLN3-208ENST00000561505 RAB6BQ9NRW1 208 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 RIC8BQ9NVN3 520 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PLA2G3Q9NZ20 509 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PTGFRNQ9P2B2 879 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 MYO7BQ6PIF6 2116 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 TACC2O95359 2948 aa15.61■□□□□ 0.09
CLN3-208ENST00000561505 PSIP1O75475 530 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 ICAM2P13598 275 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 MST1P26927 711 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 GRNP28799 593 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 CMPK1P30085 196 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 CA7P43166 264 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 AP2B1P63010 937 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 PRDX1Q06830 199 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 ZNF630Q2M218 657 aaPredicted RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 H3F3CQ6NXT2 135 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 BNC2Q6ZN30 1099 aaPredicted RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 TMEM139Q8IV31 216 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 ZNF808Q8N4W9 903 aaPredicted RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 FBXO15Q8NCQ5 510 aaPredicted RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 PPHLN1Q8NEY8 458 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 OR9A1PQ8NGU1 263 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 SMPDL3AQ92484 453 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 LPGAT1Q92604 370 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 CCDC120Q96HB5 630 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 TCF12Q99081 682 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 KIFC1Q9BW19 673 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 IL22Q9GZX6 179 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 PAK5Q9P286 719 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 STOX2Q9P2F5 926 aaPredicted RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 TRPC4Q9UBN4 977 aa15.6■□□□□ 0.09
CLN3-208ENST00000561505 RUVBL2Q9Y230 463 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 RUVBL1Q9Y265 456 aaKnown RBP15.6■□□□□ 0.09
CLN3-208ENST00000561505 WDPCPO95876 746 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 FTCDO95954 541 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 CRYABP02511 175 aaKnown RBP15.59■□□□□ 0.09
CLN3-208ENST00000561505 PTMAP06454 111 aaKnown RBP15.59■□□□□ 0.09
CLN3-208ENST00000561505 APRTP07741 180 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 ITGAMP11215 1152 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 ETS1P14921 441 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 AGAP20933 346 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 CXCR2P25025 360 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 NPY2RP49146 381 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.59■□□□□ 0.09
CLN3-208ENST00000561505 ARMC3Q5W041 872 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 MTFR2Q6P444 385 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 DRICH1Q6PGQ1 229 aaPredicted RBP15.59■□□□□ 0.09
CLN3-208ENST00000561505 CNSTQ6PJW8 725 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 GFRALQ6UXV0 394 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 RPTNQ6XPR3 784 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 ZC3H7AQ8IWR0 971 aaKnown RBP15.59■□□□□ 0.09
CLN3-208ENST00000561505 PRSS58Q8IYP2 241 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 SIRT6Q8N6T7 355 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 GSDMBQ8TAX9 411 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 FOPNLQ96NB1 174 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 CHST11Q9NPF2 352 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 POLQO75417 2590 aa15.59■□□□□ 0.09
CLN3-208ENST00000561505 A0A0U1RQJ8 604 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 OR5H15A6NDH6 313 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 ARHGEF33A8MVX0 844 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 E7EVH7 732 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 H3BMM5 538 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 AP3B1O00203 1094 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 TXNDC9O14530 226 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 VPS26AO75436 327 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 NDUFS3O75489 264 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 WFS1O76024 890 aa15.58■□□□□ 0.08
CLN3-208ENST00000561505 IFNB1P01574 187 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms