RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PLIN3O60664 434 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 SRP72O76094 671 aaKnown RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 VCLP18206 1134 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 XRCC1P18887 633 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 ITGA3P26006 1051 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 PBLDP30039 288 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 SLC19A1P41440 591 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 ARCN1P48444 511 aaKnown RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 CLCNKAP51800 687 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 EPHA4P54764 986 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 SF3A3Q12874 501 aaKnown RBP eCLIP12.09□□□□□ -0.471e-13■■■□□ 16.4
SHMT2-230ENST00000557427 BNIP1Q12981 228 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 ELOAQ14241 798 aaKnown RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 POU6F1Q14863 301 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 KIR2DS5Q14953 304 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 SPRED3Q2MJR0 410 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 CCDC153Q494R4 210 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF517Q6ZMY9 492 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-230ENST00000557427 NLRP9Q7RTR0 991 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 C11orf96Q7Z7L8 435 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 SYVN1Q86TM6 617 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 AMZ2Q86W34 360 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 C10orf67Q8IYJ2 551 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 VPS39Q96JC1 886 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 RMDN2Q96LZ7 410 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 ZNF778Q96MU6 729 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 GPR22Q99680 433 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 TIMM29Q9BSF4 260 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 FAM167BQ9BTA0 163 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 FAM8A1Q9UBU6 413 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 CRLS1Q9UJA2 301 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 EMCNQ9ULC0 261 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 PSMD13Q9UNM6 376 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 PKDREJQ9NTG1 2253 aa12.09□□□□□ -0.47
SHMT2-230ENST00000557427 OR52A4PA6NMU1 304 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 LDB2O43679 373 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 KIF1CO43896 1103 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 SNNO75324 88 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 UBOX5O94941 541 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 PROCP04070 461 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 TYRP1P17643 537 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 SKIV2L2P42285 1042 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 XIAPP98170 497 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 ILF2Q12905 390 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 THOC5Q13769 683 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 SETDB1Q15047 1291 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 TSTD2Q5T7W7 516 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 FAM83HQ6ZRV2 1179 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 KIAA0408Q6ZU52 694 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 TAS2R42Q7RTR8 314 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 GDF7Q7Z4P5 450 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 GALNT7Q86SF2 657 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 ZC3HC1Q86WB0 502 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 HPS6Q86YV9 775 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 PLXDC1Q8IUK5 500 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 FITM2Q8N6M3 262 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 DDHD1Q8NEL9 900 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 CALML6Q8TD86 181 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 PEX13Q92968 403 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 CXorf40BQ96DE9 158 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 DCUN1D1Q96GG9 259 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 DNAJC1Q96KC8 554 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 GPR87Q9BY21 358 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 ZCCHC2Q9C0B9 1178 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 RASSF4Q9H2L5 321 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 RUBCNLQ9H714 662 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 WDR37Q9Y2I8 494 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 MTO1Q9Y2Z2 717 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 CAPN7Q9Y6W3 813 aa12.08□□□□□ -0.48
SHMT2-230ENST00000557427 ANKHD1Q8IWZ3 2542 aaKnown RBP12.08□□□□□ -0.48
SHMT2-230ENST00000557427 MDC1Q14676 2089 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 A0A096LPK6 155 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 KCNJ13O60928 360 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 VAPBO95292 243 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 APOA4P06727 396 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 SNRPB2P08579 225 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 PRSS56P0CW18 603 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 COL6A2P12110 1019 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 AMD1P17707 334 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 ARNTP27540 789 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 MC4RP32245 332 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 CDKN1CP49918 316 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 ZNF140P52738 457 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 KRTAP10-9P60411 292 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 UBE2IP63279 158 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 OCRLQ01968 901 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 BST1Q10588 318 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 RAPSNQ13702 412 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 NFE2L1Q14494 772 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 CHI3L2Q15782 390 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 FASTKD1Q53R41 847 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 FAM69BQ5VUD6 431 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 PWWP2BQ6NUJ5 590 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 ABRAXAS1Q6UWZ7 409 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 TMEM26Q6ZUK4 368 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 LMNTD2Q8IXW0 634 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 CFAP206Q8IYR0 622 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 ZNF295-AS1Q8N0V1 137 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms