RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZNF425Q6IV72 752 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 FBXO42Q6P3S6 717 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 LRRC70Q7Z2Q7 622 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 GOLGA7Q7Z5G4 137 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 C17orf64Q86WR6 236 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 CACTIN-AS1Q8N1I8 211 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 TEX9Q8N6V9 391 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 ANKRD42Q8N9B4 389 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 C19orf47Q8N9M1 422 aaKnown RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 RDH11Q8TC12 318 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PRR11Q96HE9 360 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PKNOX2Q96KN3 472 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PRAP1Q96NZ9 151 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 FCRL4Q96PJ5 515 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 HAUS8Q9BT25 410 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PCBD2Q9H0N5 130 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 SPNS1Q9H2V7 528 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 ZBTB26Q9HCK0 441 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 OXSMQ9NWU1 459 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 OPTCQ9UBM4 332 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PCTPQ9UKL6 214 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 WASF3Q9UPY6 502 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 KLK4Q9Y5K2 254 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 PTPRBP23467 1997 aa12.32□□□□□ -0.44
SHMT2-227ENST00000557269 ADAMTS20P59510 1910 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 A0A1B0GTL3 188 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 OR2A25A4D2G3 310 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 OR7A17O14581 309 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ZBTB11O95625 1053 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 EBLN1P0CF75 366 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 DHRS4L1P0CG22 281 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CD22P20273 847 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 IMPDH1P20839 514 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CCR10P46092 362 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 GABRA4P48169 554 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CDH13P55290 713 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 WDR4P57081 412 aaKnown RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 HERVK_113P63132 956 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CSNK1G2P78368 415 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 HSD11B2P80365 405 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ABATP80404 500 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CDC16Q13042 620 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 GTF2H2Q13888 395 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 COL9A2Q14055 689 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 GPR19Q15760 415 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PDK4Q16654 411 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 DEFB110Q30KQ9 67 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF678Q5SXM1 525 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CES4AQ5XG92 561 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 GTF2H2CQ6P1K8 395 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 NXPE4Q6UWF7 544 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 SLCO4C1Q6ZQN7 724 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 DGLUCYQ7Z3D6 616 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PAQR7Q86WK9 346 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PLD3Q8IV08 490 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 CARFQ8N187 725 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 D2HGDHQ8N465 521 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 DNAJC22Q8N4W6 341 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 GOLGA6L1Q8N7Z2 621 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 BMPERQ8N8U9 685 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF740Q8NDX6 193 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ABHD11Q8NFV4 315 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 MDM1Q8TC05 714 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ZNF483Q8TF39 744 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 SLC5A11Q8WWX8 675 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 L3HYPDHQ96EM0 354 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PLCD4Q9BRC7 762 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 C1QTNF3Q9BXJ4 246 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 ERVK-6Q9BXR3 956 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 SOHLH2Q9NX45 425 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 SIDT1Q9NXL6 827 aaKnown RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PILRAQ9UKJ1 303 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 KLK13Q9UKR3 277 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 BTRCQ9Y297 605 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 DYRK1BQ9Y463 629 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 TNPO3Q9Y5L0 923 aaKnown RBP12.31□□□□□ -0.44
SHMT2-227ENST00000557269 KCNE2Q9Y6J6 123 aa12.31□□□□□ -0.44
SHMT2-227ENST00000557269 PCM1Q15154 2024 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 FEZF1A0PJY2 475 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 WDR91A4D1P6 747 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 EFCAB7A8K855 629 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 HMGB1P1B2RPK0 211 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 H3BQF6 201 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 HAT1O14929 419 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 HGSO14964 777 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 TM9SF1O15321 606 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ATP8B1O43520 1251 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ZWINTO95229 277 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 CCNDBP1O95273 360 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 FKBP9O95302 570 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 BPGMP07738 259 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 FGF3P11487 239 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ITIH1P19827 911 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 HPDP32754 393 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 CSTF2P33240 577 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-227ENST00000557269 ETV5P41161 510 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 SERPINB4P48594 390 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 NAGLUP54802 743 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 DNAJB13P59910 316 aa12.3□□□□□ -0.44
SHMT2-227ENST00000557269 RAB11FIP2Q7L804 512 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms