RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ASMTP46597 345 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 STX4Q12846 297 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 TBCEQ15813 527 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 UGT3A2Q3SY77 523 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 VPS26BQ4G0F5 336 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SPOUT1Q5T280 376 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CAPN13Q6MZZ7 669 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 C3orf33Q6P1S2 294 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 FAM131AQ6UXB0 335 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ABI3BPQ7Z7G0 1075 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 GLCCI1Q86VQ1 547 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 C12orf45Q8N5I9 185 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 OR6C4Q8NGE1 309 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 OR2T4Q8NH00 348 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 NSUN4Q96CB9 384 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 RBBP8Q99708 897 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CD244Q9BZW8 370 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 VAV3Q9UKW4 847 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ATF5Q9Y2D1 282 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 RNF215Q9Y6U7 377 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 TRAV19A0A0A6YYK7 116 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 WASH4PA8MWX3 477 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SCAMP3O14828 347 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CHP2O43745 196 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 APBB3O95704 486 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 APOC3P02656 99 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 FAM157BP0CG42 384 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 PDGFRAP16234 1089 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 RAB3BP20337 219 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 LIMK2P53671 638 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 C21orf58P58505 322 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ERVK-25P63136 954 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ALKBH1Q13686 389 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 KEAP1Q14145 624 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SMN1Q16637 294 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 MICBQ29980 383 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 AHSA2Q719I0 299 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 EIF3MQ7L2H7 374 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 HSD17B13Q7Z5P4 300 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 KIAA0907Q7Z7F0 614 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SLC9B2Q86UD5 537 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SLC51AQ86UW1 340 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 GFM1Q96RP9 751 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 TMEM175Q9BSA9 504 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ERVK-6Q9BXR3 956 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 RBCK1Q9BYM8 510 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ZYG11BQ9C0D3 744 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 TASP1Q9H6P5 420 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CARS2Q9HA77 564 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 FOLH1BQ9HBA9 442 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 STARD7Q9NQZ5 370 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 SLC22A11Q9NSA0 550 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 MYEF2Q9P2K5 600 aaKnown RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 TMEFF2Q9UIK5 374 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-226ENST00000556825 ERVW-1Q9UQF0 538 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 CLCA3PQ9Y6N3 262 aa13.44□□□□□ -0.26
SHMT2-226ENST00000556825 VEGFDO43915 354 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 RASGRP1O95267 797 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ADRB2P07550 413 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 FHP07954 510 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 TSPAN8P19075 237 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 SSTR2P30874 369 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 SDC4P31431 198 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 CTNNB1P35222 781 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 RORAP35398 523 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 RFC3P40938 356 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 VEGFCP49767 419 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 HUNKP57058 714 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 C1QTNF8P60827 252 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 POU4F1Q01851 419 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PRKG2Q13237 762 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 NCF4Q15080 339 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 FCN2Q15485 313 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 MPEG1Q2M385 716 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 RABL3Q5HYI8 236 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 COQ5Q5HYK3 327 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 DGKKQ5KSL6 1271 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 FSTL4Q6MZW2 842 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 SPESP1Q6UW49 350 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ZER1Q7Z7L7 766 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PSTKQ8IV42 348 aaKnown RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 LAX1Q8IWV1 398 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 CRYBG2Q8N1P7 616 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 STYXQ8WUJ0 223 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 UPRTQ96BW1 309 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ITCHQ96J02 903 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 COQ10AQ96MF6 247 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 KCNA7Q96RP8 456 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 C19orf43Q9BQ61 176 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ALX4Q9H161 411 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ANKRD19PQ9H560 264 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 NDRG4Q9ULP0 352 aaKnown RBP13.43□□□□□ -0.26
SHMT2-226ENST00000556825 JAG2Q9Y219 1238 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ARFGEF1Q9Y6D6 1849 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 IRS2Q9Y4H2 1338 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 ADAM12O43184 909 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 DLX3O60479 287 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 PGAM1P18669 254 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 LHCGRP22888 699 aa13.43□□□□□ -0.26
SHMT2-226ENST00000556825 MAPK1P28482 360 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms