RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SOCS3O14543 225 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 ZNF197O14709 1029 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SIX3O95343 332 aaPredicted RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 IGHV3-13P01766 116 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CSN3P07498 182 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 ZSCAN5DPP0CG00 497 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SCG2P13521 617 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 ERCC2P18074 760 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CD22P20273 847 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 PTGER4P35408 488 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 LHX1P48742 406 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CLDN15P56746 228 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CX3CL1P78423 397 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 ITGA7Q13683 1181 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 RRS1Q15050 365 aaKnown RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CA9Q16790 459 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SPDYCQ5MJ68 293 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 C6orf136Q5SQH8 315 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 FAM166AQ6J272 317 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 PP632Q6XCG6 107 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 GLRX5Q86SX6 157 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 COMMD2Q86X83 199 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 VSIG1Q86XK7 387 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 THNSL1Q8IYQ7 743 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SSMEM1Q8WWF3 244 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 IRGQQ8WZA9 623 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 MRPS27Q92552 414 aaKnown RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 GTF3AQ92664 365 aaKnown RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SECISBP2LQ93073 1101 aaKnown RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SPSB1Q96BD6 273 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 MOB3AQ96BX8 217 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CPNE1Q99829 537 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 RPP25Q9BUL9 199 aaKnown RBP2.64□□□□□ -1.99
SCFD1-218ENST00000556256 CLEC7AQ9BXN2 247 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 SH3GLB2Q9NR46 395 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 OLFML3Q9NRN5 406 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 ERAP1Q9NZ08 941 aa2.64□□□□□ -1.99
SCFD1-218ENST00000556256 IGHV3OR16-10A0A075B7F0 116 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 A0A1W2PN81 502 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TSPY2A6NKD2 308 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 KPNA7A9QM74 516 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 CLDN4O14493 209 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 MEIS2O14770 477 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 EIF5BO60841 1220 aaKnown RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 DIAPH2O60879 1101 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 CDC123O75794 336 aaPredicted RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 PRB2P02812 416 aaPredicted RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TSPY3P0CV98 308 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TSPY8P0CW00 308 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 HAPLN1P10915 354 aaPredicted RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 ZBTB25P24278 435 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 PTPN3P26045 913 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 CHRNA7P36544 502 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 GP5P40197 560 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 NPY4RP50391 375 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 MAPK12P53778 367 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 RPS18P62269 152 aaKnown RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TSPY1Q01534 308 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 DRP2Q13474 957 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 SCARB2Q14108 478 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TNIP1Q15025 636 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 P2RY6Q15077 328 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 SGSM1Q2NKQ1 1148 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 MFSD12Q6NUT3 480 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 DCLRE1AQ6PJP8 1040 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 CORO6Q6QEF8 472 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 ZBTB49Q6ZSB9 765 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 DET1Q7L5Y6 550 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 NUP54Q7Z3B4 507 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 NUDT13Q86X67 352 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TTC30BQ8N4P2 665 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 EXT2Q93063 718 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 OTUB1Q96FW1 271 aaPredicted RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 RAB3IPQ96QF0 476 aaPredicted RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 FNBP1Q96RU3 617 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 MYADMQ96S97 322 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 A4GALTQ9NPC4 353 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 CHCHD3Q9NX63 227 aaKnown RBP2.63□□□□□ -1.99
SCFD1-218ENST00000556256 ANAPC5Q9UJX4 755 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 RNF150Q9ULK6 438 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 SLC7A7Q9UM01 511 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 TRIM17Q9Y577 477 aa2.63□□□□□ -1.99
SCFD1-218ENST00000556256 IGLV9-49A0A0B4J1Y8 123 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 OR6C76A6NM76 312 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 ANXA2P2A6NMY6 339 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 PHOX2AO14813 284 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 SMIM18P0DKX4 95 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 SAGP10523 405 aaPredicted RBP2.62□□□□□ -1.99
SCFD1-218ENST00000556256 HSPA8P11142 646 aaKnown RBP2.62□□□□□ -1.99
SCFD1-218ENST00000556256 EPCAMP16422 314 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 CA4P22748 312 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 EEF1B2P24534 225 aaKnown RBP2.62□□□□□ -1.99
SCFD1-218ENST00000556256 RBMS1P29558 406 aaKnown RBP2.62□□□□□ -1.99
SCFD1-218ENST00000556256 HSPA4P34932 840 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 POU5F1Q01860 360 aaKnown RBP2.62□□□□□ -1.99
SCFD1-218ENST00000556256 LGALS3BPQ08380 585 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 DMPKQ09013 629 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 ZNF415Q09FC8 603 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 NFATC2Q13469 925 aa2.62□□□□□ -1.99
SCFD1-218ENST00000556256 CUL3Q13618 768 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms