RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 HNRNPFP52597 415 aaKnown RBP25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 LAPTM5Q13571 262 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 LRRC36Q1X8D7 754 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 SFT2D3Q587I9 215 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 LCTLQ6UWM7 567 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 RNF175Q8N4F7 328 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 OR5AR1Q8NGP9 310 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC5A11Q8WWX8 675 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 DNASE1L2Q92874 299 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 TSSK3Q96PN8 268 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 MTERF1Q99551 399 aaKnown RBP25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 TIMM29Q9BSF4 260 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 TRIM8Q9BZR9 551 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 MAN2B2Q9Y2E5 1009 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 NEUROG3Q9Y4Z2 214 aa25.45■■□□□ 1.66
CCDC88C-205ENST00000553403 KCNJ13O60928 360 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 MYO1DO94832 1006 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 PRPS1L1P21108 318 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 TACR1P25103 407 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 C21orf58P58505 322 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 GRAMD1BQ3KR37 738 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 NXPE4Q6UWF7 544 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 USP30Q70CQ3 517 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 PROSER1Q86XN7 944 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 LAS2Q8IYD9 372 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 OR5K2Q8NHB8 316 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 SH3GL1Q99961 368 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC6A17Q9H1V8 727 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 RMND5AQ9H871 391 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 TM7SF3Q9NS93 570 aa25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 CCM2LQ9NUG4 571 aaPredicted RBP25.44■■□□□ 1.66
CCDC88C-205ENST00000553403 ZNF839A8K0R7 811 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 FOXE1O00358 373 aaPredicted RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 ERN1O75460 977 aaKnown RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 PCNAP12004 261 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 ACSM2AQ08AH3 577 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 SFSWAPQ12872 951 aaKnown RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 DDX39BQ13838 428 aaKnown RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 HIST2H2ACQ16777 129 aaPredicted RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 DPY19L1Q2PZI1 675 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 ACSM2BQ68CK6 577 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 HIST2H2AA3Q6FI13 130 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 PHC3Q8NDX5 983 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 HUS1BQ8NHY5 278 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 C11orf24Q96F05 449 aaPredicted RBP25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 HAUS8Q9BT25 410 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 OSBPL6Q9BZF3 934 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 KCNH6Q9H252 994 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 SPATA7Q9P0W8 599 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 NCKAP1Q9Y2A7 1128 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 PCDHB3Q9Y5E6 796 aa25.43■■□□□ 1.66
CCDC88C-205ENST00000553403 PRR23AA6NEV1 266 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 MAGEB17A8MXT2 336 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 DFNA5O60443 496 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 IGFALSP35858 605 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 TSTA3Q13630 321 aaPredicted RBP25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SLBPQ14493 270 aaKnown RBP eCLIP25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 PRAMEF14Q5SWL7 426 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 CATSPEREQ5SY80 951 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 PRAMEF13Q5VWM6 474 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 CAPRIN2Q6IMN6 1127 aaKnown RBP25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 IRGCQ6NXR0 463 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 IFNEQ86WN2 208 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 TICAM1Q8IUC6 712 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SPPL2CQ8IUH8 684 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 CHTF18Q8WVB6 975 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SIPA1Q96FS4 1042 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 ITCHQ96J02 903 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 VAPAQ9P0L0 249 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 PPT2Q9UMR5 302 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 MAPRE3Q9UPY8 281 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC17A4Q9Y2C5 497 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 A0A096LPI6 279 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SLC35G4P0C7Q5 338 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 PHC1P78364 1004 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 CYP2A13Q16696 494 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SPIN4Q56A73 249 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 LRIF1Q5T3J3 769 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SYT12Q8IV01 421 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 CANT1Q8WVQ1 401 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 STARD8Q92502 1023 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 UBE2E3Q969T4 207 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 BTBD9Q96Q07 612 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 TRIT1Q9H3H1 467 aaKnown RBP25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 GEMIN8Q9NWZ8 242 aaKnown RBP25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 SH2B3Q9UQQ2 575 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 TSC22D4Q9Y3Q8 395 aa25.42■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3DA0A087WVF3 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3IA0A087WXS9 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3EA0A087X179 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3KA0A087X1G2 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 KANSL1LA0AUZ9 987 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 DHRS12A0PJE2 317 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3FA6NER0 549 aaPredicted RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 C2CD4DB7Z1M9 353 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3LB9A6J9 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 GPIP06744 558 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 TBC1D3HP0C7X1 549 aa25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 SRSF11Q05519 484 aaKnown RBP25.41■■□□□ 1.66
CCDC88C-205ENST00000553403 MTAPQ13126 283 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms