RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 NLGN4XQ8N0W4 816 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 IL22RA1Q8N6P7 574 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 SLC38A9Q8NBW4 561 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 NLGN4YQ8NFZ3 816 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ATL1Q8WXF7 558 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 EXT2Q93063 718 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ISL2Q96A47 359 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 KIAA1191Q96A73 305 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 CRELD1Q96HD1 420 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 OR4K3Q96R72 315 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 PLCD4Q9BRC7 762 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 PCBD2Q9H0N5 130 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 VPS11Q9H270 941 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ALG9Q9H6U8 611 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 SYNPO2LQ9H987 977 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 AKIRIN1Q9H9L7 192 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 NMRAL1Q9HBL8 299 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 SSUH2Q9Y2M2 353 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 E7EQ34 232 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 H7BY64 318 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ZNF749O43361 778 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CPNE3O75131 537 aaKnown RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 SHBGP04278 402 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 NPPBP16860 134 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CCND1P24385 295 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CNTFP26441 200 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 SLC26A3P40879 764 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 GLRBP48167 497 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 GPS2Q13227 327 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 MAP7Q14244 749 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 NAA30Q147X3 362 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 NAA25Q14CX7 972 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 PTCHD3Q3KNS1 767 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ZC3H12BQ5HYM0 836 aaKnown RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 MANEAQ5SRI9 462 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 FRMPD2BQ6IN97 320 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 FBXO42Q6P3S6 717 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ADGRD1Q6QNK2 874 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 LCTLQ6UWM7 567 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 RNF44Q7L0R7 432 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ADCK2Q7Z695 626 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CCDC91Q7Z6B0 441 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ISCA2Q86U28 154 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 C17orf64Q86WR6 236 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 PLD3Q8IV08 490 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 GPR135Q8IZ08 494 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 PLD6Q8N2A8 252 aaKnown RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ESX1Q8N693 406 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ZNF655Q8N720 491 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 AENQ8WTP8 325 aaKnown RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 RHBDF1Q96CC6 855 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 PRAP1Q96NZ9 151 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CCNL2Q96S94 520 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 SELENOSQ9BQE4 189 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ACTR5Q9H9F9 607 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-226ENST00000553011 IRAK4Q9NWZ3 460 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 ANKMY1Q9P2S6 941 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 RNF112Q9ULX5 631 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 SNX7Q9UNH6 387 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 PCDHB3Q9Y5E6 796 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 MGAQ8IWI9 3026 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 CHD6Q8TD26 2715 aa13.53□□□□□ -0.24
PTCH1-226ENST00000553011 LOC105369274A0A096LPK9 316 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 LOC102723532A0A0G2JNH3 316 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 LOC101059948A0A1B0GTJ6 334 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 HAT1O14929 419 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 TAPBPO15533 448 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 ZSCAN9O15535 394 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-226ENST00000553011 EFSO43281 561 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 KRT37O76014 449 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 KLHL2O95198 593 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 SNRPAP09012 282 aaKnown RBP13.52□□□□□ -0.25
PTCH1-226ENST00000553011 CDH1P12830 882 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 WT1P19544 449 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-226ENST00000553011 HSD17B3P37058 310 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 STAT5AP42229 794 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 GDF5P43026 501 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 VSX2P58304 361 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-226ENST00000553011 FAM83EQ2M2I3 478 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 FBXO48Q5FWF7 155 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 BROXQ5VW32 411 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 THOC6Q86W42 341 aaKnown RBP13.52□□□□□ -0.25
PTCH1-226ENST00000553011 OR4N4Q8N0Y3 316 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 STAG3L4Q8TBR4 150 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 CLIP3Q96DZ5 547 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 ZNF285Q96NJ3 590 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 GPR78Q96P69 363 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 ATOH8Q96SQ7 321 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 ZFYVE21Q9BQ24 234 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 TMEM79Q9BSE2 394 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 PARD6BQ9BYG5 372 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 CPNE5Q9HCH3 593 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 STARD5Q9NSY2 213 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 TMEM184CQ9NVA4 438 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 ZNF358Q9NW07 568 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 CD274Q9NZQ7 290 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 FETUBQ9UGM5 382 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 FAM208BQ5VWN6 2430 aa13.52□□□□□ -0.25
PTCH1-226ENST00000553011 H0YGG7 62 aa13.51□□□□□ -0.25
PTCH1-226ENST00000553011 UBXN8O00124 270 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms