RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 IFI30P13284 250 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ELNP15502 786 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 AQP1P29972 269 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TNFSF8P32971 234 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MAGEA2P43356 314 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MAGEA11P43364 429 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MLLT6P55198 1093 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SNRPD2P62316 118 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CD83Q01151 205 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PRKCDQ05655 676 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 RAD51Q06609 339 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NPRL3Q12980 569 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SF1Q15637 639 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 IQCCQ4KMZ1 466 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MFSD14CQ5VZR4 134 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 GDF6Q6KF10 455 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MRNIPQ6NTE8 343 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TTC23LQ6PF05 361 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 AGMOQ6ZNB7 445 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 VN1R5Q7Z5H4 357 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CCDC190Q86UF4 302 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 HIPK1Q86Z02 1210 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF683Q8IZ20 524 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 NATD1Q8N6N6 113 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ATG16L2Q8NAA4 619 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR4M1Q8NGD0 313 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 OR6K2Q8NGY2 324 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 MAP6Q96JE9 813 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TRNT1Q96Q11 434 aaKnown RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 SNX18Q96RF0 628 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CPPED1Q9BRF8 314 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-214ENST00000552783 C1QTNF3Q9BXJ4 246 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CLPBQ9H078 707 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 CSNK1G1Q9HCP0 422 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 TIGARQ9NQ88 270 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 C1orf109Q9NX04 203 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PPT2Q9UMR5 302 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 ORC6Q9Y5N6 252 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PTCH2Q9Y6C5 1203 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PLXNA4Q9HCM2 1894 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PTPRDP23468 1912 aa4.72□□□□□ -1.65
LIMA1-214ENST00000552783 PIKFYVEQ9Y2I7 2098 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 CENPXA8MT69 81 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM229AB2RXF0 380 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 LOC110117498-PIK3R3F6TDL0 507 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 WWP2O00308 870 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 YY2O15391 372 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 CAPN5O15484 640 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 NBNO60934 754 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 CPNE3O75131 537 aaKnown RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 SCELO95171 688 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 RETP07949 1114 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 COL6A1P12109 1028 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 ACPPP15309 386 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 SSTR4P31391 388 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 SLC15A1P46059 708 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 RGS6P49758 472 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF135P52742 658 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 CAMK2GQ13555 558 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 KEAP1Q14145 624 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 GRB14Q14449 540 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 PROX2Q3B8N5 592 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 WDR45BQ5MNZ6 344 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA1614Q5VZ46 1190 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 PDE12Q6L8Q7 609 aaKnown RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 DOK6Q6PKX4 331 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 WDR53Q7Z5U6 358 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 FAM124AQ86V42 546 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 TSPYL5Q86VY4 417 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 LAX1Q8IWV1 398 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 RGL4Q8IZJ4 473 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF675Q8TD23 568 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 GPR151Q8TDV0 419 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 MAL2Q969L2 176 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 FAM120BQ96EK7 910 aaKnown RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 SERPINB11Q96P15 392 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 PHOX2BQ99453 314 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 TRIM62Q9BVG3 475 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 IL1RAPQ9NPH3 570 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 LATS2Q9NRM7 1088 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 KRT84Q9NSB2 600 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 COQ3Q9NZJ6 369 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 PSORS1C1Q9UIG5 152 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 FKBPLQ9UIM3 349 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 WBP11Q9Y2W2 641 aaKnown RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 SAMHD1Q9Y3Z3 626 aaKnown RBP4.71□□□□□ -1.65
LIMA1-214ENST00000552783 V9GYH0 126 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 ANKRD36A6QL64 1941 aa4.71□□□□□ -1.65
LIMA1-214ENST00000552783 MEIOCA2RUB1 952 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 SAGE2PA6NJ88 616 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CENPBD1B2RD01 187 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 HAS3O00219 553 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 STX16O14662 325 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 FGF10O15520 208 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 GPX5O75715 221 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 GLUD1P00367 558 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 ASGR1P07306 291 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 CHRM5P08912 532 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-214ENST00000552783 BCKDHAP12694 445 aa4.71□□□□□ -1.66
LIMA1-214ENST00000552783 POU2F1P14859 743 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms