RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TTLL9Q3SXZ7 439 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 PAGE2BQ5JRK9 111 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 RETSATQ6NUM9 610 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 NOXRED1Q6NXP6 359 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF783Q6ZMS7 281 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 CYP2U1Q7Z449 544 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 PTOV1Q86YD1 416 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 BBS7Q8IWZ6 715 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ZZZ3Q8IYH5 903 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 RORBQ92753 470 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 MAL2Q969L2 176 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ASIC4Q96FT7 647 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 TPD52L3Q96J77 140 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF641Q96N77 438 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF347Q96SE7 839 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 MTERF1Q99551 399 aaKnown RBP7.27□□□□□ -1.24
LIMA1-213ENST00000552720 COPS8Q99627 209 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 SLC29A3Q9BZD2 475 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 IL1RAPQ9NPH3 570 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 AKIP1Q9NQ31 210 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 POLE4Q9NR33 117 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 KCTD5Q9NXV2 234 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 DAPK2Q9UIK4 370 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 STOML2Q9UJZ1 356 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 GMPPBQ9Y5P6 360 aa7.27□□□□□ -1.24
LIMA1-213ENST00000552720 DNAH14Q0VDD8 3507 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 REV3LO60673 3130 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 AGAP14A8MT82 685 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 GFRA2O00451 464 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 PRRG1O14668 218 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 JRKO75564 520 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ABLIM3O94929 683 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 GABARAPO95166 117 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CCNDBP1O95273 360 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 NADKO95544 446 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 EFEMP2O95967 443 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 MYCP01106 439 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 LCKP06239 509 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CCDC159P0C7I6 412 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ITGAMP11215 1152 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CDH3P22223 829 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ACVR2AP27037 513 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 KIR3DL1P43629 444 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CCL23P55773 120 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 MVKQ03426 396 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 KCNC4Q03721 635 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 SREBF2Q12772 1141 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CHIT1Q13231 466 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 TOP3AQ13472 1001 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 DNASE1L3Q13609 305 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 GPR33Q49SQ1 333 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 KDM4DQ6B0I6 523 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 RNF165Q6ZSG1 346 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 DEFB128Q7Z7B8 93 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 TTC29Q8NA56 475 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ZBTB8BQ8NAP8 495 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 KLHL23Q8NBE8 558 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF540Q8NDQ6 660 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 TAMM41Q96BW9 452 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 HSH2DQ96JZ2 352 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 CEP295NLQ96MC4 621 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 FAM210AQ96ND0 272 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM175Q9BSA9 504 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 C2orf49Q9BVC5 232 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 BTBD2Q9BX70 525 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 SMG9Q9H0W8 520 aaKnown RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 DUSP21Q9H596 190 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ATP13A3Q9H7F0 1226 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 RMND5AQ9H871 391 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 ZDHHC3Q9NYG2 299 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 SAMD4AQ9UPU9 718 aaKnown RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 SAMHD1Q9Y3Z3 626 aaKnown RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 MYO7AQ13402 2215 aa7.27□□□□□ -1.25
LIMA1-213ENST00000552720 GOLGA4Q13439 2230 aaKnown RBP7.27□□□□□ -1.25
LIMA1-213ENST00000552720 MTCL1Q9Y4B5 1905 aaKnown RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KRBA1A5PL33 1030 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM202A6NGA9 273 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 M0R3G1 203 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SCN2BO60939 215 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FKBP9O95302 570 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ETHE1O95571 254 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FABP3P05413 133 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LAMP1P11279 417 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PRPS2P11908 318 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 BMP4P12644 408 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SRCP12931 536 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TNFRSF1BP20333 461 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SERPINA4P29622 427 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KDELR2P33947 212 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KRT20P35900 424 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 MAGEA10P43363 369 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SLC6A12P48065 614 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CREMQ03060 361 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FOXD4Q12950 439 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CLCA4Q14CN2 919 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 MAD2L1BPQ15013 274 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 VMACQ2NL98 169 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TRIM16LQ309B1 348 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CCSMST1Q4G0I0 132 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ZC3H12BQ5HYM0 836 aaKnown RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms