RNA–Protein interactions for RNA: ENST00000544223.6

HCFC2-202, Transcript of host cell factor C2, humanhuman

TSL 2

Gene HCFC2, Length 2,538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-202ENST00000544223 BMFQ96LC9 184 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 SLC29A3Q9BZD2 475 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 FOXQ1Q9C009 403 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 GPRC5BQ9NZH0 403 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 ZIM2Q9NZV7 527 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 NEUROG3Q9Y4Z2 214 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 KCNE2Q9Y6J6 123 aa13.21□□□□□ -0.29
HCFC2-202ENST00000544223 ZNF839A8K0R7 811 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 EEDO75530 441 aaKnown RBP13.2□□□□□ -0.3
HCFC2-202ENST00000544223 AMD1P17707 334 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 GRIA3P42263 894 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 CDKN2CP42773 168 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 CACHD1Q5VU97 1274 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 NOXRED1Q6NXP6 359 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 ISLR2Q6UXK2 745 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 MMP21Q8N119 569 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 C1orf52Q8N6N3 182 aaKnown RBP13.2□□□□□ -0.3
HCFC2-202ENST00000544223 ATL1Q8WXF7 558 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 TMEM125Q96AQ2 219 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 BTBD1Q9H0C5 482 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 DPEP2Q9H4A9 486 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 NDE1Q9NXR1 346 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 ERVK-11Q9UQG0 969 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 BTBD3Q9Y2F9 522 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 FANCMQ8IYD8 2048 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 H7BY64 318 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 KMOO15229 486 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 YY2O15391 372 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 HNF4AP41235 474 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 LRIT3Q3SXY7 679 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 PYCR3Q53H96 274 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 GALNT13Q8IUC8 556 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 OR5K2Q8NHB8 316 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 MAGEC3Q8TD91 643 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 SH3KBP1Q96B97 665 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 PRAP1Q96NZ9 151 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 OR52E6Q96RD3 313 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 PHF7Q9BWX1 381 aaPredicted RBP13.2□□□□□ -0.3
HCFC2-202ENST00000544223 TMEM168Q9H0V1 697 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 TCEAL2Q9H3H9 227 aaPredicted RBP13.2□□□□□ -0.3
HCFC2-202ENST00000544223 PFDN4Q9NQP4 134 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 CCDC177Q9NQR7 707 aaPredicted RBP13.2□□□□□ -0.3
HCFC2-202ENST00000544223 TBC1D29Q9UFV1 150 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 PCDHA9Q9Y5H5 950 aa13.2□□□□□ -0.3
HCFC2-202ENST00000544223 A0A0G2JN53 185 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 RTCAO00442 366 aaKnown RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 TPST1O60507 370 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 BCAS2O75934 225 aaPredicted RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 LMNAP02545 664 aaKnown RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 PGRP06401 933 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 CASP9P55211 416 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MUM1Q2TAK8 710 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 HKDC1Q2TB90 917 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 GGTA1PQ4G0N0 100 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 OR4F3Q6IEY1 312 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.19□□□□□ -0.32e-6■■■■■ 163.7
HCFC2-202ENST00000544223 WDR48Q8TAF3 677 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 PATE1Q8WXA2 126 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 ROPN1LQ96C74 230 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 CCT7Q99832 543 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 TBCDQ9BTW9 1192 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MENTQ9BUN1 341 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SLC25A37Q9NYZ2 338 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 STOML1Q9UBI4 398 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 VPS29Q9UBQ0 182 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 NCKAP1Q9Y2A7 1128 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 PRSS38A1L453 326 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 PIPSLA2A3N6 862 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 CELA2BP08218 269 aaPredicted RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 JAK1P23458 1154 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 OR4D2P58180 307 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 RAE1P78406 368 aaKnown RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MC1RQ01726 317 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 LIPEQ05469 1076 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 RBBP5Q15291 538 aaKnown RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 TRIP10Q15642 601 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MAP7D1Q3KQU3 841 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 LIPJQ5W064 366 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 KIAA1161Q6NSJ0 714 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MSRB3Q8IXL7 192 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SLC13A3Q8WWT9 602 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SLCO4A1Q96BD0 722 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 MIEF2Q96C03 454 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 ASB9Q96DX5 294 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SGPP1Q9BX95 441 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 LEF1Q9UJU2 399 aaPredicted RBP13.19□□□□□ -0.3
HCFC2-202ENST00000544223 SCN3AQ9NY46 2000 aa13.19□□□□□ -0.3
HCFC2-202ENST00000544223 BBIP1A8MTZ0 92 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 PPM1DO15297 605 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 NVLO15381 856 aaKnown RBP13.18□□□□□ -0.3
HCFC2-202ENST00000544223 OXTRP30559 389 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 GSK3BP49841 420 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 SMAD4Q13485 552 aaKnown RBP13.18□□□□□ -0.3
HCFC2-202ENST00000544223 TAF11Q15544 211 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 PRAMEF14Q5SWL7 426 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 PRAMEF13Q5VWM6 474 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 GRHL2Q6ISB3 625 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 METTL2BQ6P1Q9 378 aaKnown RBP13.18□□□□□ -0.3
HCFC2-202ENST00000544223 OXR1Q8N573 874 aa13.18□□□□□ -0.3
HCFC2-202ENST00000544223 SLC5A11Q8WWX8 675 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms