RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	THRA	P10827	490 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ST6GAL1	P15907	406 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TSPAN8	P19075	237 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	HRH2	P25021	359 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	VARS	P26640	1264 aa	Known RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	GRK3	P35626	688 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	MLLT3	P42568	568 aa	Predicted RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ETV4	P43268	484 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ID4	P47928	161 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CCNG1	P51959	295 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	DNAJB13	P59910	316 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PPP2R2A	P63151	447 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	HSD11B2	P80365	405 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZFP36L1	Q07352	338 aa	Known RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CHIT1	Q13231	466 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TRA2A	Q13595	282 aa	Known RBP eCLIP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PCLAF	Q15004	111 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ISX	Q2M1V0	245 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	UNC50	Q53HI1	259 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZNF678	Q5SXM1	525 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CATSPERE	Q5SY80	951 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CDCP2	Q5VXM1	449 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	LIPM	Q5VYY2	423 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	METTL2B	Q6P1Q9	378 aa	Known RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	FOXR1	Q6PIV2	292 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	NXPE4	Q6UWF7	544 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TMPRSS12	Q86WS5	348 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	FAM129C	Q86XR2	697 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLITRK4	Q8IW52	837 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	KLHDC8A	Q8IYD2	350 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CARF	Q8N187	725 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CHCHD4	Q8N4Q1	142 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TBC1D19	Q8N5T2	526 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	C19orf47	Q8N9M1	422 aa	Known RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	AGBL5	Q8NDL9	886 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	FLVCR1-AS1	Q8TAF5	88 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TRPC4AP	Q8TEL6	797 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	DYDC1	Q8WWB3	177 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	NEIL2	Q969S2	332 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZUFSP	Q96AP4	578 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	MOCOS	Q96EN8	888 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TCTN2	Q96GX1	697 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	NSUN5	Q96P11	429 aa	Known RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TMEM237	Q96Q45	408 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CMKLR1	Q99788	373 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	AIF1L	Q9BQI0	150 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PITPNM3	Q9BZ71	974 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	DRC3	Q9H069	523 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	IPPK	Q9H8X2	491 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	ACTR8	Q9H981	624 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLC6A20	Q9NP91	592 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	TMEM184C	Q9NVA4	438 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	IRAK4	Q9NWZ3	460 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	GPRC5B	Q9NZH0	403 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PDP2	Q9P2J9	529 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545	PCTP	Q9UKL6	214 aa		9.77	□□□□□ -0.85
CPSF7-221	ENST00000543545		A0A0J9YVX5	310 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	FAM149A	A5PLN7	773 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	EFCAB7	A8K855	629 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545		E7EQ34	232 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	E2F3	O00716	465 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	BIRC5	O15392	142 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	CRCP	O75575	148 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	RPS17	P08708	135 aa	Known RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	C1GALT1C1L	P0DN25	315 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	CHN1	P15882	459 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	NR1D1	P20393	614 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	CXCR2	P25025	360 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLC18A1	P54219	525 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	WDR4	P57081	412 aa	Known RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	NAA20	P61599	178 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	MEF2A	Q02078	507 aa	Predicted RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	CLC	Q05315	142 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	FOXM1	Q08050	763 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	TARDBP	Q13148	414 aa	Known RBP eCLIP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	KCNAB1	Q14722	419 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	RBBP5	Q15291	538 aa	Known RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	CHI3L2	Q15782	390 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZIC1	Q15915	447 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	HIST2H2AC	Q16777	129 aa	Predicted RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZC3H12B	Q5HYM0	836 aa	Known RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	PAGE2B	Q5JRK9	111 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	HIST2H2AA3	Q6FI13	130 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	SLCO4C1	Q6ZQN7	724 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZCCHC23	Q6ZST2	131 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	RPS27L	Q71UM5	84 aa	Known RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ARHGAP22	Q7Z5H3	698 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	MILR1	Q7Z6M3	343 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	KMT5C	Q86Y97	462 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	PLD3	Q8IV08	490 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	KRT78	Q8N1N4	520 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	GALNT15	Q8N3T1	639 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZNF483	Q8TF39	744 aa	Predicted RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ADAMTS14	Q8WXS8	1223 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	KLHL6	Q8WZ60	621 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	L3HYPDH	Q96EM0	354 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	PLCD4	Q9BRC7	762 aa		9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	GATA5	Q9BWX5	397 aa	Predicted RBP	9.76	□□□□□ -0.85
CPSF7-221	ENST00000543545	ZNF768	Q9H5H4	540 aa	Known RBP	9.76	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms