RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 OR1C1Q15619 314 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CLEC16AQ2KHT3 1053 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ELOA3BQ3SY89 546 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 Q5PR19 223 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 LDLRAP1Q5SW96 308 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CCDC122Q5T0U0 273 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 KLHDC7AQ5VTJ3 777 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CCDC70Q6NSX1 233 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TUBA3EQ6PEY2 450 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 PODNL1Q6PEZ8 512 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 FAM151BQ6UXP7 276 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 NLRP9Q7RTR0 991 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 NLRC3Q7RTR2 1065 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TMC3Q7Z5M5 1100 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 WDR53Q7Z5U6 358 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF677Q86XU0 584 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 WFDC8Q8IUA0 241 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 MCATQ8IVS2 390 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ULK2Q8IYT8 1036 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 DNAJC22Q8N4W6 341 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 C2orf73Q8N5S3 287 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CPSF7Q8N684 471 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TEX26Q8N6G2 289 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TTC29Q8NA56 475 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TMEM178AQ8NBL3 297 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CCNYQ8ND76 341 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 FAM13CQ8NE31 585 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ELOA3Q8NG57 546 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 OR5M9Q8NGP3 310 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ARRDC2Q8TBH0 407 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 DENND1AQ8TEH3 1009 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 COX4I2Q96KJ9 171 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF354BQ96LW1 612 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 VPS35Q96QK1 796 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 OR2A14Q96R47 310 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 EIF3CQ99613 913 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 UTP23Q9BRU9 249 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 TRIM51Q9BSJ1 452 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 BDH2Q9BUT1 245 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 BRINP2Q9C0B6 783 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 HAUS2Q9NVX0 235 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 SPHK1Q9NYA1 384 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 ZNF282Q9UDV7 671 aaPredicted RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 HOOK1Q9UJC3 728 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 GNPTGQ9UJJ9 305 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 PLAGL1Q9UM63 463 aa4.53□□□□□ -1.68
LIMS1-214ENST00000542845 RPL26L1Q9UNX3 145 aaKnown RBP4.53□□□□□ -1.68
LIMS1-214ENST00000542845 PHF3Q92576 2039 aaKnown RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 IGHV3-20A0A0C4DH32 117 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 A0A0J9YY10 115 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 F8VZ95 297 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 TFECO14948 347 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 MATN3O15232 486 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SEC24DO94855 1032 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 EIF2S1P05198 315 aaKnown RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SP1P08047 785 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ICAM2P13598 275 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 UCHL3P15374 230 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 MAGP20916 626 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 FBLP22087 321 aaKnown RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 PDHA2P29803 388 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SERPINB6P35237 376 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 VSX2P58304 361 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 DCDC1P59894 354 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 BRD3Q15059 726 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 LONRF2Q1L5Z9 754 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 BTBD16Q32M84 506 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 RNFT1Q5M7Z0 435 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ACER2Q5QJU3 275 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 C10orf62Q5T681 223 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 GPRC6AQ5T6X5 926 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 MFSD4BQ5TF39 518 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 MRM1Q6IN84 353 aaKnown RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ACAD10Q6JQN1 1059 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SLC25A25Q6KCM7 469 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ZNF585AQ6P3V2 769 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ZNF449Q6P9G9 518 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SARM1Q6SZW1 724 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 UNC5AQ6ZN44 842 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ACAD11Q709F0 780 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 POLNQ7Z5Q5 900 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 PAQR7Q86WK9 346 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 PHF13Q86YI8 300 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 TMTC1Q8IUR5 882 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 LIX1LQ8IVB5 337 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SIAH3Q8IW03 269 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 CHERPQ8IWX8 916 aaKnown RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 FMR1NBQ8N0W7 255 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 LMNTD1Q8N9Z9 388 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 OR2L2Q8NH16 312 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 CCM2Q9BSQ5 444 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 STK33Q9BYT3 514 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 CEP41Q9BYV8 373 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 ATG10Q9H0Y0 220 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 DEFB127Q9H1M4 99 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 SLC26A1Q9H2B4 701 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 TP63Q9H3D4 680 aaPredicted RBP4.52□□□□□ -1.69
LIMS1-214ENST00000542845 NDST4Q9H3R1 872 aa4.52□□□□□ -1.69
LIMS1-214ENST00000542845 TFB2MQ9H5Q4 396 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms