RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SEPHS2Q99611 448 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 INPP5KQ9BT40 448 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 THUMPD3Q9BV44 507 aaKnown RBP13.34□□□□□ -0.27
RTN3-210ENST00000540798 TRIM39Q9HCM9 518 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 FAM8A1Q9UBU6 413 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 GPR34Q9UPC5 381 aa13.34□□□□□ -0.27
RTN3-210ENST00000540798 H3BM21 787 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 H3BNH8 94 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 CLOCKO15516 846 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 CDKN2CP42773 168 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 WNT3P56703 355 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 MERTKQ12866 999 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 IYDQ6PHW0 289 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 SLCO4C1Q6ZQN7 724 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 FKBP9P1Q75LS8 142 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 SATL1Q86VE3 508 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 C10orf111Q8N326 155 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 ZNF514Q96K75 400 aaPredicted RBP13.33□□□□□ -0.27
RTN3-210ENST00000540798 RNF145Q96MT1 663 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 PRPF18Q99633 342 aaKnown RBP13.33□□□□□ -0.27
RTN3-210ENST00000540798 ADI1Q9BV57 179 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 ATXN10Q9UBB4 475 aa13.33□□□□□ -0.27
RTN3-210ENST00000540798 TRIM64A6NGJ6 449 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 PLK4O00444 970 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 PGM3O95394 542 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 H6PDO95479 791 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 RAE1P78406 368 aaKnown RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 PLOD1Q02809 727 aaPredicted RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 FCHO2Q0JRZ9 810 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 MAP7Q14244 749 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 NKG7Q16617 165 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 UGT8Q16880 541 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 CNPY1Q3B7I2 92 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 FAM98BQ52LJ0 330 aaKnown RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 TMEM132CQ8N3T6 1108 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 OR8J2Q8NGG1 315 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 ZNF480Q8WV37 535 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 POP5Q969H6 163 aaKnown RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 COX14Q96I36 57 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 BDH2Q9BUT1 245 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 SGPP1Q9BX95 441 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 MCOLN1Q9GZU1 580 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 OR2AG1Q9H205 316 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 THAP10Q9P2Z0 257 aaPredicted RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 RUVBL1Q9Y265 456 aaKnown RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 INVSQ9Y283 1065 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 MYOCOSA0A1B0GUC4 107 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 CXCR6O00574 342 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 EI24O14681 340 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 MMP20O60882 483 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 GPR1P46091 355 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 TRPC1P48995 793 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 PNLIPRP1P54315 467 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 SRSF11Q05519 484 aaKnown RBP13.33□□□□□ -0.28
RTN3-210ENST00000540798 C11orf96Q7Z7L8 435 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 FAM86B1Q8N7N1 296 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 CHFRQ96EP1 664 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 MED8Q96G25 268 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 UGT2B28Q9BY64 529 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 CD320Q9NPF0 282 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 SIRT5Q9NXA8 310 aa13.33□□□□□ -0.28
RTN3-210ENST00000540798 PCM1Q15154 2024 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 VEGFDO43915 354 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 B3GALT4O96024 378 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ACADLP28330 430 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 PBLDP30039 288 aaPredicted RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 RAET1GQ6H3X3 334 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 VITQ6UXI7 678 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 CAMKMTQ7Z624 323 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 GPR180Q86V85 440 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 PHACTR4Q8IZ21 702 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 OR2L2Q8NH16 312 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 CHTF18Q8WVB6 975 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 RAB7BQ96AH8 199 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 REXO5Q96IC2 774 aaKnown RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 RBM38Q9H0Z9 239 aaKnown RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 DPEP2Q9H4A9 486 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 DCAF13Q9NV06 445 aaKnown RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 ADGRE2Q9UHX3 823 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 PCDHGA11Q9Y5H2 935 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 GMEB1Q9Y692 573 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 A0A1B0GTW7 788 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 TRIM64CA6NLI5 447 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ETHE1O95571 254 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 P2RY2P41231 377 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 IL12RB1P42701 662 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ABHD18Q0P651 414 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ADRM1Q16186 407 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 TBPL2Q6SJ96 375 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ENPP6Q6UWR7 440 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 USP51Q70EK9 711 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 ZNF551Q7Z340 670 aaPredicted RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 CFAP206Q8IYR0 622 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 OR7G3Q8NG95 312 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 HM13Q8TCT9 377 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 FIG4Q92562 907 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 NEIL2Q969S2 332 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 MAGIXQ9H6Y5 334 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 SGK2Q9HBY8 427 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 PRSS16Q9NQE7 514 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms