RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PLEKHG6Q3KR16 790 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 ZNF678Q5SXM1 525 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 OGFRL1Q5TC84 451 aaPredicted RBP9.72□□□□□ -0.85
TRAF1-202ENST00000540010 OR4F3Q6IEY1 312 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 ZZZ3Q8IYH5 903 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 OR5K1Q8NHB7 308 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 NUSAP1Q9BXS6 441 aaKnown RBP9.72□□□□□ -0.85
TRAF1-202ENST00000540010 RPF2Q9H7B2 306 aaKnown RBP9.72□□□□□ -0.85
TRAF1-202ENST00000540010 IGSF5Q9NSI5 407 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 NUMBLQ9Y6R0 609 aa9.72□□□□□ -0.85
TRAF1-202ENST00000540010 NYNRINQ9P2P1 1898 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 LOC100130705A0A1B0GUX0 176 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 KERAO60938 352 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 IST1P53990 364 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 TUBA4AP68366 448 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SLC7A9P82251 487 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 GANABQ14697 944 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 ZNF423Q2M1K9 1284 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 TECRLQ5HYJ1 363 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 KLHL35Q6PF15 583 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 PACRGLQ8N7B6 248 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 TCEAL4Q96EI5 215 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 TRIB3Q96RU7 358 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 MYOCQ99972 504 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 DCSTAMPQ9H295 470 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 EQTNQ9NQ60 294 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SNTG1Q9NSN8 517 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SMOXQ9NWM0 555 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 LHX3Q9UBR4 397 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 LCHNA4D1U4 455 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SAP18O00422 153 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SOCS2O14508 198 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 PER2O15055 1255 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 VARSP26640 1264 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 IFNGR2P38484 337 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 STK19P49842 368 aaPredicted RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 KCNAB2Q13303 367 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SEMA3AQ14563 771 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SNAPC1Q16533 368 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 CTC1Q2NKJ3 1217 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 PIGGQ5H8A4 983 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 TMPRSS11AQ6ZMR5 421 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 HTR3DQ70Z44 454 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 CHMP1BQ7LBR1 199 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 METTL3Q86U44 580 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 RAB43Q86YS6 212 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SVOPLQ8N434 492 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 MRPL43Q8N983 215 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SMYD1Q8NB12 490 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 KCNC2Q96PR1 638 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 KRCC1Q9NPI7 259 aaPredicted RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 C11orf16Q9NQ32 467 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 POLE4Q9NR33 117 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 MRPS23Q9Y3D9 190 aaKnown RBP9.71□□□□□ -0.85
TRAF1-202ENST00000540010 SPACA6W5XKT8 324 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 PLXNA3P51805 1871 aa9.71□□□□□ -0.85
TRAF1-202ENST00000540010 ASCC3Q8N3C0 2202 aaKnown RBP9.71□□□□□ -0.86
TRAF1-202ENST00000540010 KLHL33A6NCF5 533 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 CAPN14A8MX76 684 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 H3BNH8 94 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 CLIC1O00299 241 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 AXIN1O15169 862 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 EIF2S1P05198 315 aaKnown RBP9.71□□□□□ -0.86
TRAF1-202ENST00000540010 PGRP06401 933 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 CR2P20023 1033 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 S100A1P23297 94 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 ARRB2P32121 409 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 SPAM1P38567 509 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 CDKN1CP49918 316 aaPredicted RBP9.71□□□□□ -0.86
TRAF1-202ENST00000540010 ZNF140P52738 457 aaPredicted RBP9.71□□□□□ -0.86
TRAF1-202ENST00000540010 ZXDBP98169 803 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 ANXA8L1Q5VT79 327 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 ALG1LQ6GMV1 187 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 SLC22A16Q86VW1 577 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 WDR48Q8TAF3 677 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 NARS2Q96I59 477 aaKnown RBP9.71□□□□□ -0.86
TRAF1-202ENST00000540010 AASDHPPTQ9NRN7 309 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 TDP1Q9NUW8 608 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 CMTM6Q9NX76 183 aa9.71□□□□□ -0.86
TRAF1-202ENST00000540010 K7EPI3 171 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 CLPXO76031 633 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 FGF19O95750 216 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 RHOP08100 348 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 C1QTNF8P60827 252 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 NTHL1P78549 312 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 CBX2Q14781 532 aaPredicted RBP9.7□□□□□ -0.86
TRAF1-202ENST00000540010 TIGD6Q17RP2 521 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 SULT1C3Q6IMI6 304 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 USP7Q93009 1102 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 TMEM203Q969S6 136 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 RPS6KB2Q9UBS0 482 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 N6AMT1Q9Y5N5 214 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 LOC730098B7Z3J9 87 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 H3BM21 787 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 GRM6O15303 877 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 STX11O75558 287 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 SERPINB7O75635 380 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 PRLP01236 227 aa9.7□□□□□ -0.86
TRAF1-202ENST00000540010 C9P02748 559 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms