RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DTWD1Q8N5C7 304 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 TTC29Q8NA56 475 aaPredicted RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 FAM45AQ8TCE6 357 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 MCOLN3Q8TDD5 553 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ZFYVE21Q9BQ24 234 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ABCF3Q9NUQ8 709 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 ZFATQ9P243 1243 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 STOX2Q9P2F5 926 aaPredicted RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 NDOR1Q9UHB4 597 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 TP53TG5Q9Y2B4 290 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 VWA7Q9Y334 891 aa14.15□□□□□ -0.14
USP28-204ENST00000537642 PTRH2Q9Y3E5 179 aaKnown RBP14.15□□□□□ -0.14
USP28-204ENST00000537642 H0YGG7 62 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 SLC16A5O15375 505 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 CCNDBP1O95273 360 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 NR1D1P20393 614 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 IL2P60568 153 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 ARF3P61204 181 aaPredicted RBP14.14□□□□□ -0.15
USP28-204ENST00000537642 SP140Q13342 867 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 PDAP1Q13442 181 aaKnown RBP14.14□□□□□ -0.15
USP28-204ENST00000537642 PHKG1Q16816 387 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 CAPN12Q6ZSI9 719 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 COX15Q7KZN9 410 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 STRA8Q7Z7C7 330 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 ZC3HC1Q86WB0 502 aaKnown RBP14.14□□□□□ -0.15
USP28-204ENST00000537642 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.14□□□□□ -0.15
USP28-204ENST00000537642 CCDC138Q96M89 665 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 ING2Q9H160 280 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 PARVBQ9HBI1 364 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 SAYSD1Q9NPB0 183 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 SMYD2Q9NRG4 433 aa14.14□□□□□ -0.15
USP28-204ENST00000537642 CUEDC1Q9NWM3 386 aaPredicted RBP14.14□□□□□ -0.15
USP28-204ENST00000537642 HYKKA2RU49 373 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 PYCARD-AS1I3L0S3 204 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 J3QKU1 62 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 EIF3HO15372 352 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP28-204ENST00000537642 PDGFAP04085 211 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 EIF2S1P05198 315 aaKnown RBP14.13□□□□□ -0.15
USP28-204ENST00000537642 UMODP07911 640 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 CD63P08962 238 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 OTX2P32243 289 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 FOLR3P41439 243 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 TBPL1P62380 186 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 ABATP80404 500 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 ATP1A4Q13733 1029 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 SSPNQ14714 243 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 PRTGQ2VWP7 1150 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 FAM214AQ32MH5 1076 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 THEMIS2Q5TEJ8 643 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 TCTN3Q6NUS6 607 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 TMEM207Q6UWW9 146 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 OVCH1Q7RTY7 1134 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 SLC26A11Q86WA9 606 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 RAB43Q86YS6 212 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 PALM2Q8IXS6 379 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 METTL27Q8N6F8 245 aaPredicted RBP14.13□□□□□ -0.15
USP28-204ENST00000537642 OR2Y1Q8NGV0 311 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 PYROXD1Q8WU10 500 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 FKBP10Q96AY3 582 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 C10orf90Q96M02 699 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 MCMBPQ9BTE3 642 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 CCDC177Q9NQR7 707 aaPredicted RBP14.13□□□□□ -0.15
USP28-204ENST00000537642 ACSS2Q9NR19 701 aa14.13□□□□□ -0.15
USP28-204ENST00000537642 UTP11Q9Y3A2 253 aaKnown RBP14.13□□□□□ -0.15
USP28-204ENST00000537642 SPENQ96T58 3664 aaKnown RBP14.13□□□□□ -0.15
USP28-204ENST00000537642 FAM95CA0A1B0GW59 222 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 HAT1O14929 419 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 PIAS1O75925 651 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 PIM1P11309 404 aaPredicted RBP14.12□□□□□ -0.15
USP28-204ENST00000537642 EZRP15311 586 aaKnown RBP14.12□□□□□ -0.15
USP28-204ENST00000537642 SSTR1P30872 391 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 OR1D4P47884 311 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 CCL11P51671 97 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 RELAQ04206 551 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 TRADDQ15628 312 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 ZXDCQ2QGD7 858 aaPredicted RBP14.12□□□□□ -0.15
USP28-204ENST00000537642 PRAMEF13Q5VWM6 474 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 AGTRAPQ6RW13 159 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 ATG14Q6ZNE5 492 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 MRGPREQ86SM8 312 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 PLD3Q8IV08 490 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 PTERQ96BW5 349 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 C16orf45Q96MC5 204 aaPredicted RBP14.12□□□□□ -0.15
USP28-204ENST00000537642 OR2A5Q96R48 311 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 ATG10Q9H0Y0 220 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 UTP6Q9NYH9 597 aaKnown RBP14.12□□□□□ -0.15
USP28-204ENST00000537642 CDC23Q9UJX2 597 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 IKZF3Q9UKT9 509 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 SH2B3Q9UQQ2 575 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 MAU2Q9Y6X3 613 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 NUP210LQ5VU65 1888 aa14.12□□□□□ -0.15
USP28-204ENST00000537642 CXorf49A8MYA2 514 aaPredicted RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 H7BY64 318 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 CEACAM4O75871 244 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ALBP02768 609 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 ZNF37AP17032 561 aaPredicted RBP14.11□□□□□ -0.15
USP28-204ENST00000537642 SAT1P21673 171 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 PLTPP55058 493 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 TAS2R39P59534 338 aa14.11□□□□□ -0.15
USP28-204ENST00000537642 NAE1Q13564 534 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms