RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 KLF2Q9Y5W3 355 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 hCG_1807616A0A1W2PRN6 198 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 SH3D21A4FU49 640 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 PGRP06401 933 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 ZNF37AP17032 561 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 GPD1P21695 349 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 YWHAQP27348 245 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 LIPAP38571 399 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 HSF2Q03933 536 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 ZNF284Q2VY69 593 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 PYDC2Q56P42 97 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 ARHGAP17Q68EM7 881 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 C9orf62Q8N4C0 152 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 COLGALT1Q8NBJ5 622 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 OR4D10Q8NGI6 311 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 OR6M1Q8NGM8 313 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 COQ8BQ96D53 544 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 GPR137Q96N19 417 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 OMDQ99983 421 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 COPS4Q9BT78 406 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 LDAHQ9H6V9 325 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 ASAH2Q9NR71 780 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 ABCB8Q9NUT2 735 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 DNAJC11Q9NVH1 559 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 MCUBQ9NWR8 336 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 COPZ2Q9P299 210 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 MGAT4AQ9UM21 535 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 PCDHB14Q9Y5E9 798 aa10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 MAFBQ9Y5Q3 323 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-207ENST00000537408 A0A0A0MRY4 1105 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TUBAL3A6NHL2 446 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 ATP6AP2O75787 350 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TSPAN19P0C672 248 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 HOXB6P17509 224 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 PNPLA4P41247 253 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 MAP2K3P46734 347 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CDH17Q12864 832 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SLC46A3Q7Z3Q1 461 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SLC22A9Q8IVM8 553 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CLHC1Q8NHS4 586 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TSPEARQ8WU66 669 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 FAM162AQ96A26 154 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SPATA13Q96N96 652 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TBCDQ9BTW9 1192 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 LRRC3Q9BY71 257 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 C11orf54Q9H0W9 315 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 EXOSC4Q9NPD3 245 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TRPM5Q9NZQ8 1165 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 LIMD1Q9UGP4 676 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 COLQQ9Y215 455 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 E9PAM4 449 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 MUSKO15146 869 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 VPS26AO75436 327 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 PRSS23O95084 383 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 ITGB6P18564 788 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 KEAP1Q14145 624 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 GRM7Q14831 915 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SV2CQ496J9 727 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 GPR139Q6DWJ6 353 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TMC8Q8IU68 726 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 FBXO30Q8TB52 745 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 RPL10LQ96L21 214 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 RBM14Q96PK6 669 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 DPYSL5Q9BPU6 564 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TRMOQ9BU70 441 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TMEM134Q9H6X4 195 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 ACTR8Q9H981 624 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 ERVW-1Q9UQF0 538 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SMLR1H3BR10 107 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 LBPP18428 481 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CAPN3P20807 821 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TAF6P49848 677 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SLC35F1Q5T1Q4 408 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 TDRD10Q5VZ19 366 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 PLPP4Q5VZY2 271 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 FCRLBQ6BAA4 426 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 LAMTOR1Q6IAA8 161 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 BHLHB9Q6PI77 547 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CCDC149Q6ZUS6 474 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CCDC36Q8IYA8 594 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 CRYGNQ8WXF5 182 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 NXPE3Q969Y0 559 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 PIGUQ9H490 435 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 SCML1Q9UN30 329 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 LIPT1Q9Y234 373 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 PTPRJQ12913 1337 aa10.59□□□□□ -0.71
CLSTN3-207ENST00000537408 MROH6A6NGR9 719 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 KIAA0513O60268 411 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 CA3P07451 260 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 CYP4B1P13584 511 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 BTF3P20290 206 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 PCSK1P29120 753 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 FGFBP1Q14512 234 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 TRIM69Q86WT6 500 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 RNF130Q86XS8 419 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 FUNDC1Q8IVP5 155 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 ARFGAP1Q8N6T3 406 aa10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 NIFKQ9BYG3 293 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC19A3Q9BZV2 496 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms