RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PABPN1LA6NDY0 278 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 ZNF839A8K0R7 811 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 STX16-NPEPL1H3BU86 382 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MYO1CO00159 1063 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 STX16O14662 325 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PCDHGA12O60330 932 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 DLX3O60479 287 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SNX2O60749 519 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 H2AFYO75367 372 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 CER1O95813 267 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 TOP3BO95985 862 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 ZNF883P0CG24 379 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MYL2P10916 166 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MTHFD1P11586 935 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 CSRP1P21291 193 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 GRK2P25098 689 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 OAS2P29728 719 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 ALDH3A1P30838 453 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 ADMP35318 185 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SERPINB5P36952 375 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MDH1P40925 334 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 NOVA1P51513 510 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 GALNT1Q10472 559 aaPredicted RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 BNIP3Q12983 259 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SLC14A1Q13336 389 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 C1orf61Q13536 156 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PCBP2Q15366 365 aaKnown RBP eCLIP7.17□□□□□ -1.26
CD44-228ENST00000528455 SHBQ15464 509 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 NKG7Q16617 165 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PHKG1Q16816 387 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PRAMEF14Q5SWL7 426 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 LIPMQ5VYY2 423 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SLC30A9Q6PML9 568 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 LAYNQ6UX15 382 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 FRA10AC1Q70Z53 315 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 KANSL1Q7Z3B3 1105 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SLC9B2Q86UD5 537 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SHISA5Q8N114 240 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 NAGSQ8N159 534 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SFRP1Q8N474 314 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 RAB42Q8N4Z0 105 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CCDC63Q8NA47 563 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 KCT2Q8NC54 265 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PDPRQ8NCN5 879 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 HMGCLL1Q8TB92 370 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SAP25Q8TEE9 199 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 NKD1Q969G9 470 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SH3KBP1Q96B97 665 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 RHBDF1Q96CC6 855 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 L3HYPDHQ96EM0 354 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CNDP1Q96KN2 507 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 RMDN2Q96LZ7 410 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MAGEB18Q96M61 343 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CAMK1GQ96NX5 476 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SELENOSQ9BQE4 189 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 C1QTNF3Q9BXJ4 246 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CAPS2Q9BXY5 557 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 CD244Q9BZW8 370 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 C12orf65Q9H3J6 166 aaKnown RBP7.17□□□□□ -1.26
CD44-228ENST00000528455 SLC32A1Q9H598 525 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 GAREM1Q9H706 876 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 KIR3DX1Q9H7L2 352 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 MANSC1Q9H8J5 431 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 UCK1Q9HA47 277 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SLC40A1Q9NP59 571 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 ARL15Q9NXU5 204 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 NUDT4Q9NZJ9 180 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CD274Q9NZQ7 290 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 SIRPGQ9P1W8 387 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 XPR1Q9UBH6 696 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 PCDHGB2Q9Y5G2 931 aa7.17□□□□□ -1.26
CD44-228ENST00000528455 CABIN1Q9Y6J0 2220 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 NPEPPSL1A6NEC2 478 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PDZK1P1A8MUH7 402 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ARHGEF33A8MVX0 844 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 KLF11O14901 512 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 TAPBPO15533 448 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 EML2O95834 649 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 GUCA1CO95843 209 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 VIPP01282 170 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 IGLV1-40P01703 118 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 S100BP04271 92 aaPredicted RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 PGRP06401 933 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 GIMD1P0DJR0 217 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ALPPL2P10696 532 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CEACAM1P13688 526 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 GFAPP14136 432 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PNLIPP16233 465 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CCND1P24385 295 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 FASLGP48023 281 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 NAGLUP54802 743 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 HERVK_113P63132 956 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 GRIK2Q13002 908 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 GRB7Q14451 532 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 SLBPQ14493 270 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-228ENST00000528455 PCLAFQ15004 111 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PDK4Q16654 411 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CYP2A13Q16696 494 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PFKFB4Q16877 469 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms