RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CTSL3PQ5NE16 218 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 LRRC6Q86X45 466 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 MCEMP1Q8IX19 187 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 CABS1Q96KC9 395 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 ACAT2Q9BWD1 397 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 TRPC4Q9UBN4 977 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 ZNF148Q9UQR1 794 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 MRPS2Q9Y399 296 aaKnown RBP22.42■■□□□ 1.18
CPSF1-202ENST00000527827 PDZD2O15018 2839 aa22.42■■□□□ 1.18
CPSF1-202ENST00000527827 NDUFS3O75489 264 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 BMP10O95393 424 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 MATN4O95460 622 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 F10P00742 488 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 ERGP11308 486 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 GRNP28799 593 aaKnown RBP22.41■■□□□ 1.18
CPSF1-202ENST00000527827 CMPK1P30085 196 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 CRADDP78560 199 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 GBX1Q14549 363 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 NAA30Q147X3 362 aaPredicted RBP22.41■■□□□ 1.18
CPSF1-202ENST00000527827 MPP5Q8N3R9 675 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 AMER2Q8N7J2 671 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 AMER3Q8N944 861 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 C1orf54Q8WWF1 131 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 ITLN2Q8WWU7 325 aaPredicted RBP22.41■■□□□ 1.18
CPSF1-202ENST00000527827 FOPNLQ96NB1 174 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 BIRC8Q96P09 236 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 TSR3Q9UJK0 312 aaKnown RBP22.41■■□□□ 1.18
CPSF1-202ENST00000527827 CDC14AQ9UNH5 594 aa22.41■■□□□ 1.18
CPSF1-202ENST00000527827 RUVBL1Q9Y265 456 aaKnown RBP22.41■■□□□ 1.18
CPSF1-202ENST00000527827 IGKV1-8A0A0C4DH67 115 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 CXCR2P25025 360 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 NMBRP28336 390 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 SLC26A3P40879 764 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 ZNF75DP51815 510 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 EIF3BP55884 814 aaKnown RBP22.4■■□□□ 1.18
CPSF1-202ENST00000527827 SESN2P58004 480 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-202ENST00000527827 ART3Q13508 389 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 NAA25Q14CX7 972 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 FAAH2Q6GMR7 532 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 GFRALQ6UXV0 394 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 RIPOR1Q6ZS17 1223 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 PAQR7Q86WK9 346 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 MAGEC3Q8TD91 643 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 MVB12AQ96EY5 273 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 PLCD4Q9BRC7 762 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 YIPF2Q9BWQ6 316 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 FRMD8P1Q9BZ68 369 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-202ENST00000527827 C14orf105Q9NVL8 296 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 CAPN6Q9Y6Q1 641 aa22.4■■□□□ 1.18
CPSF1-202ENST00000527827 LOC102723996A0A087X1L8 192 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 WDPCPO95876 746 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 ZSCAN5DPP0CG00 497 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 MST1P26927 711 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 ARNTP27540 789 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 KIF5AQ12840 1032 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 SNX1Q13596 522 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 HKDC1Q2TB90 917 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 EEF1AKMT2Q5JPI9 291 aaKnown RBP22.39■■□□□ 1.17
CPSF1-202ENST00000527827 SUSD1Q6UWL2 747 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 ARHGEF39Q8N4T4 335 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 CSNK1A1LQ8N752 337 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 OR9A1PQ8NGU1 263 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 MOCOSQ96EN8 888 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 TGIF2Q9GZN2 237 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.39■■□□□ 1.17
CPSF1-202ENST00000527827 MRPS30Q9NP92 439 aaKnown RBP22.39■■□□□ 1.17
CPSF1-202ENST00000527827 RIC8BQ9NVN3 520 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 PAK5Q9P286 719 aa22.39■■□□□ 1.17
CPSF1-202ENST00000527827 ARHGEF33A8MVX0 844 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 FOXS1O43638 330 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 NIPSNAP2O75323 286 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 WFS1O76024 890 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 HEXBP07686 556 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 ITGAMP11215 1152 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 ATP5DP30049 168 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 RPL22P35268 128 aaKnown RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 EFNA3P52797 238 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 SRSF11Q05519 484 aaKnown RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 PCOLCEQ15113 449 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 SLC13A5Q86YT5 568 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 MMABQ96EY8 250 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 CCDC120Q96HB5 630 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 PHF12Q96QT6 1004 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 OR2A5Q96R48 311 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 RNF32Q9H0A6 362 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 ZNF700Q9H0M5 742 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 MKKSQ9NPJ1 570 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 ABI3Q9P2A4 366 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 KLF2Q9Y5W3 355 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-202ENST00000527827 PCNX1Q96RV3 2341 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 PKDREJQ9NTG1 2253 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 SCN2AQ99250 2005 aa22.38■■□□□ 1.17
CPSF1-202ENST00000527827 PRPF4O43172 522 aaKnown RBP eCLIP22.37■■□□□ 1.171e-7■■■■■ 28.5
CPSF1-202ENST00000527827 PHF2O75151 1096 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 VPS26AO75436 327 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 UNC5CO95185 931 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 FMO4P31512 558 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 SEL1L2Q5TEA6 688 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 ZNF425Q6IV72 752 aa22.37■■□□□ 1.17
CPSF1-202ENST00000527827 HIBCHQ6NVY1 386 aaPredicted RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms