RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FDXRP22570 491 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 AP1S2P56377 157 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 NFKB2Q00653 900 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 CAV1Q03135 178 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 MUM1Q2TAK8 710 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 THEMIS2Q5TEJ8 643 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 SYT10Q6XYQ8 523 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 OVCH1Q7RTY7 1134 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 ZNF572Q7Z3I7 529 aaPredicted RBP19.72■□□□□ 0.75
VPS28-206ENST00000526734 ANKMY2Q8IV38 441 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 LRRC56Q8IYG6 542 aaPredicted RBP19.72■□□□□ 0.75
VPS28-206ENST00000526734 MVB12AQ96EY5 273 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 HIST1H2AHQ96KK5 128 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 FER1L6-AS2Q96M78 137 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 HIST1H2AJQ99878 128 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 H2AFJQ9BTM1 129 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 TRIM54Q9BYV2 358 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 RAB17Q9H0T7 212 aa19.72■□□□□ 0.75
VPS28-206ENST00000526734 ZNF71Q9NQZ8 489 aaPredicted RBP19.72■□□□□ 0.75
VPS28-206ENST00000526734 STOX2Q9P2F5 926 aaPredicted RBP19.72■□□□□ 0.75
VPS28-206ENST00000526734 UTP11Q9Y3A2 253 aaKnown RBP19.72■□□□□ 0.75
VPS28-206ENST00000526734 HYKKA2RU49 373 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 PEX12O00623 359 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 PRPF4O43172 522 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS28-206ENST00000526734 RAD51CO43502 376 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 KLHL41O60662 606 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 ENO2P09104 434 aaPredicted RBP19.71■□□□□ 0.75
VPS28-206ENST00000526734 CKAP4Q07065 602 aaKnown RBP19.71■□□□□ 0.75
VPS28-206ENST00000526734 KLRB1Q12918 225 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 PRTGQ2VWP7 1150 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 GARNL3Q5VVW2 1013 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 DUPD1Q68J44 220 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 FRMPD2BQ6IN97 320 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 MRGPREQ86SM8 312 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 HPS6Q86YV9 775 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 ZBED8Q8IZ13 594 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 RERGQ96A58 199 aaPredicted RBP19.71■□□□□ 0.75
VPS28-206ENST00000526734 PDLIM5Q96HC4 596 aaKnown RBP19.71■□□□□ 0.75
VPS28-206ENST00000526734 CDC14AQ9UNH5 594 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 PDE10AQ9Y233 779 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 SEC16AO15027 2179 aa19.71■□□□□ 0.75
VPS28-206ENST00000526734 IGKV1-8A0A0C4DH67 115 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 CEACAM4O75871 244 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 GSTA2P09210 222 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 OTX2P32243 289 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 CASRP41180 1078 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 PGDP52209 483 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 TBPL1P62380 186 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 C2orf54Q08AI8 447 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 PRAMEF13Q5VWM6 474 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 CPZQ66K79 652 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 FBXO42Q6P3S6 717 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 ASB18Q6ZVZ8 466 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 PPFIBP2Q8ND30 876 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 PYROXD1Q8WU10 500 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 ATL1Q8WXF7 558 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 ANKRD7Q92527 254 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 CDKL2Q92772 493 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 VPS50Q96JG6 964 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 SLC25A23Q9BV35 468 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 TRIM55Q9BYV6 548 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 DPH5Q9H2P9 285 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 MLXIPLQ9NP71 852 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 SLC22A11Q9NSA0 550 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 TMEM184CQ9NVA4 438 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 SLC17A6Q9P2U8 582 aa19.7■□□□□ 0.74
VPS28-206ENST00000526734 HELZ2Q9BYK8 2649 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 LOC105369274A0A096LPK9 316 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 LOC102723532A0A0G2JNH3 316 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 H0YGG7 62 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 TSPAN12O95859 305 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 EIF2S1P05198 315 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 ITGAXP20702 1163 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 ARF3P61204 181 aaPredicted RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 ATP1A4Q13733 1029 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 SLC9A5Q14940 896 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 FASTKD3Q14CZ7 662 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 AGTRAPQ6RW13 159 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 CYS1Q717R9 158 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 ADCK2Q7Z695 626 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 STRA8Q7Z7C7 330 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 ZC3HC1Q86WB0 502 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 PTRH1Q86Y79 214 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 OR4N4Q8N0Y3 316 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 C17orf53Q8N3J3 647 aaPredicted RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 NKAPQ8N5F7 415 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 CSNK1A1LQ8N752 337 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 THAP11Q96EK4 314 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 VPS39Q96JC1 886 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 OR2A5Q96R48 311 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 FAM129AQ9BZQ8 928 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 POPDC3Q9HBV1 291 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 ZNF304Q9HCX3 659 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 ADAMTS6Q9UKP5 1117 aa19.69■□□□□ 0.74
VPS28-206ENST00000526734 NOVA2Q9UNW9 492 aaKnown RBP19.69■□□□□ 0.74
VPS28-206ENST00000526734 DNAJB5O75953 348 aa19.68■□□□□ 0.74
VPS28-206ENST00000526734 MMP11P24347 488 aa19.68■□□□□ 0.74
VPS28-206ENST00000526734 CCL11P51671 97 aa19.68■□□□□ 0.74
VPS28-206ENST00000526734 YBX1P67809 324 aaKnown RBP19.68■□□□□ 0.74
VPS28-206ENST00000526734 COX15Q7KZN9 410 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms