RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ZSCAN18Q8TBC5 510 aaPredicted RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 NANPQ8TBE9 248 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 PPP4R1Q8TF05 950 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 SLC22A17Q8WUG5 538 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 USP7Q93009 1102 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ELP4Q96EB1 424 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 TMEM41AQ96HV5 264 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 CPB2Q96IY4 423 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ZNF479Q96JC4 524 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ZNF385AQ96PM9 386 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 BTBD9Q96Q07 612 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 OR5M11Q96RB7 305 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 OCSTAMPQ9BR26 566 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 SPON2Q9BUD6 331 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 TMED9Q9BVK6 235 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 NT5C1AQ9BXI3 368 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 MRPL4Q9BYD3 311 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 SPNS1Q9H2V7 528 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 NXF3Q9H4D5 531 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 NOL6Q9H6R4 1146 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 TMEM134Q9H6X4 195 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 RANBP3Q9H6Z4 567 aaPredicted RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ZNF556Q9HAH1 456 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 RXFP1Q9HBX9 757 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 CHST7Q9NS84 486 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 SLC6A13Q9NSD5 602 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 CCDC59Q9P031 241 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 TRPC4Q9UBN4 977 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 DNAJB9Q9UBS3 223 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 ADAM28Q9UKQ2 775 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 NFU1Q9UMS0 254 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 KIAA1024Q9UPX6 916 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 LIPT1Q9Y234 373 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 REXO2Q9Y3B8 237 aaKnown RBP7.33□□□□□ -1.24
HDAC3-216ENST00000523088 TESMINQ9Y4I5 508 aa7.33□□□□□ -1.24
HDAC3-216ENST00000523088 DOCK8Q8NF50 2099 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 A0A0A6YYH2 397 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 FAM86C2PA6NEL3 165 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 A6NJ64 397 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SMIM23A6NLE4 172 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 MEIS3P2A8K0S8 358 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 H3BMM5 538 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TMEM189-UBE2V1I3L0A0 370 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 M0R296 226 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 CYR61O00622 381 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SMAD9O15198 467 aaKnown RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ADAMDEC1O15204 470 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 LRRTM2O43300 516 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 HSPA12AO43301 675 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 DPM1O60762 260 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TRIM13O60858 407 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 HUS1O60921 280 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SCGB1D1O95968 90 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 F9P00740 461 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 F10P00742 488 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 AGTP01019 485 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 EPOP01588 193 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 IFNA6P05013 189 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ALPPP05187 535 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TFAP2AP05549 437 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 NUDT7P0C024 238 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ALPPL2P10696 532 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 RNH1P13489 461 aaKnown RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ADRB3P13945 408 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 DAOP14920 347 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 CDH2P19022 906 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ABCB4P21439 1286 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TEAD1P28347 426 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 PTPN4P29074 926 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SERPINF1P36955 418 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 PTGIRP43119 386 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 CHN2P52757 468 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 CASP6P55212 293 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TEKQ02763 1124 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 EIF4EBP2Q13542 120 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ALKBH1Q13686 389 aaKnown RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ZNF273Q14593 569 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 DRAP1Q14919 205 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 PDK1Q15118 436 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 DECR1Q16698 335 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 HKDC1Q2TB90 917 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ANO6Q4KMQ2 910 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 EOGTQ5NDL2 527 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 PDZK1Q5T2W1 519 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 BSPRYQ5W0U4 402 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 PAPD7Q5XG87 772 aaKnown RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ANKS6Q68DC2 871 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 OR5M10Q6IEU7 315 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 ANKRD26P1Q6NSI1 321 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 NANOGP8Q6NSW7 305 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 RPL13AP3Q6NVV1 102 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 TMEM71Q6P5X7 295 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 C6orf15Q6UXA7 325 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SCARA5Q6ZMJ2 495 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 FKBP9P1Q75LS8 142 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 LUZP2Q86TE4 346 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SLCO6A1Q86UG4 719 aa7.32□□□□□ -1.24
HDAC3-216ENST00000523088 SATL1Q86VE3 508 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms