RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 IMPDH1P20839 514 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 ZNHIT3Q15649 155 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SLC36A3Q495N2 470 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 HACD2Q6Y1H2 254 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CADM3Q8N126 398 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 DPP10Q8N608 796 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 BEND7Q8N7W2 519 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PHF10Q8WUB8 498 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 GAS2L1Q99501 681 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PHF11Q9UIL8 331 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 ERVW-1Q9UQF0 538 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CHD4Q14839 1912 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 MYO5AQ9Y4I1 1855 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 ICMTO60725 284 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SLITRK5O94991 958 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SOD2P04179 222 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 ATF6P18850 670 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 LEPRP48357 1165 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 UBXN11Q5T124 520 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 B3GNT9Q6UX72 402 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 KRT74Q7RTS7 529 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 FAM129CQ86XR2 697 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CMTR2Q8IYT2 770 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 MSANTD3Q96H12 275 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SORT1Q99523 831 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 MKRN2Q9H000 416 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 POLE3Q9NRF9 147 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 EXD2Q9NVH0 621 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CORO2BQ9UQ03 480 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 URADA6NGE7 173 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PTGESO14684 152 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 AP2A2O94973 939 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CSF2RAP15509 400 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SLC6A2P23975 617 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 C2orf80Q0P641 193 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CHRNA6Q15825 494 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 TRIM40Q6P9F5 258 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 HDDC3Q8N4P3 179 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 RIOK2Q9BVS4 552 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 RAB23Q9ULC3 237 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SLC9A8Q9Y2E8 581 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 NOX1Q9Y5S8 564 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 TIAM2Q8IVF5 1701 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PSIP1O75475 530 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 C9P02748 559 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 CD72P21854 359 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 RFC2P35250 354 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 GUCA1AP43080 201 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 MAP2K4P45985 399 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PUDPQ08623 228 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 FBXO43Q4G163 708 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 SULT1C3Q6IMI6 304 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 C17orf99Q6UX52 265 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 GDPD4Q6W3E5 623 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 Q8N9G6 341 aaPredicted RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 EXOSC8Q96B26 276 aaKnown RBP12.81□□□□□ -0.36
TCOF1-213ENST00000514442 TRIM8Q9BZR9 551 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PSAT1Q9Y617 370 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 ZNF780BQ9Y6R6 833 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 MYH11P35749 1972 aa12.81□□□□□ -0.36
TCOF1-213ENST00000514442 PRAMEF33A0A0G2JMD5 474 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 PRORSD1PA6NEY8 169 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 CXCR6O00574 342 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 FPGTO14772 594 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 PRAMEF10O60809 474 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 FABP3P05413 133 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 RPS27LQ71UM5 84 aaKnown RBP12.8□□□□□ -0.36
TCOF1-213ENST00000514442 ZNF767PQ75MW2 155 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 RNF44Q7L0R7 432 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 SNX29P2Q8IUI4 249 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 NDNFQ8TB73 568 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 AKTIPQ9H8T0 292 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 SDHDO14521 159 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 COCHO43405 550 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 SUV39H1O43463 412 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 VIPP01282 170 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 IFNGR2P38484 337 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 ZC3HC1Q86WB0 502 aaKnown RBP12.8□□□□□ -0.36
TCOF1-213ENST00000514442 ZZZ3Q8IYH5 903 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 VANGL1Q8TAA9 524 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-213ENST00000514442 OR10H3O60404 316 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 SULT1C4O75897 302 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 CCNYL3P0C7X3 344 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 ADH5P11766 374 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 CYBAP13498 195 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 ZNF26P17031 533 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-213ENST00000514442 DNAJB1P25685 340 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 GDI1P31150 447 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 WSCD2Q2TBF2 565 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 OR2AP1Q8NGE2 309 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 R3HDMLQ9H3Y0 253 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 TLR9Q9NR96 1032 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 TDP1Q9NUW8 608 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 FKBP14Q9NWM8 211 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 IL36AQ9UHA7 158 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 PCDHB3Q9Y5E6 796 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 N6AMT1Q9Y5N5 214 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 SOBPA7XYQ1 873 aa12.8□□□□□ -0.36
TCOF1-213ENST00000514442 MYCLP1P12525 358 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-213ENST00000514442 FSHRP23945 695 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms