RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MT-CO3P00414 261 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 SLC35G4P0C7Q5 338 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 IDSP22304 550 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 IDUAP35475 653 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 RHAGQ02094 409 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 FLOT2Q14254 428 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PARP6Q2NL67 630 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 MMEL1Q495T6 779 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 TTC23LQ6PF05 361 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 RASGEF1AQ8N9B8 481 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PPHLN1Q8NEY8 458 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 CA5BP1Q8WTZ4 195 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 FBXL8Q96CD0 374 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 WWP1Q9H0M0 922 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 CCDC86Q9H6F5 360 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 RUBCNLQ9H714 662 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 PLGRKTQ9HBL7 147 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 FGFR1OP2Q9NVK5 253 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 SNX12Q9UMY4 172 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 HECTD1Q9ULT8 2610 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 POLEQ07864 2286 aa7.67□□□□□ -1.18
LIMCH1-219ENST00000514096 ISM1B1AKI9 464 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 NUPL2O15504 423 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 PHF2O75151 1096 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 GUCA1CO95843 209 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 C9P02748 559 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ADRB1P08588 477 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RALBP11234 206 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 GM2AP17900 193 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 COILP38432 576 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 HNF4AP41235 474 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CARSP49589 748 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SH3BP2P78314 561 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CDH17Q12864 832 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 NR0B2Q15466 257 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM214AQ32MH5 1076 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM209BQ5JX69 171 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ARMC6Q6NXE6 501 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 KDELC1Q6UW63 502 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CERS6Q6ZMG9 384 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SHISA6Q6ZSJ9 500 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRTM4Q86VH4 590 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ZBED8Q8IZ13 594 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 NAGSQ8N159 534 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 LILRB4Q8NHJ6 448 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ECHDC3Q96DC8 303 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 DGCR14Q96DF8 476 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CDKN2AIPNLQ96HQ2 116 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ZDHHC5Q9C0B5 715 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SEMA6CQ9H3T2 930 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SAV1Q9H4B6 383 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 PRSS21Q9Y6M0 314 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 A0A1W2PRQ8 180 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CFAP99D6REC4 459 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 NIPSNAP2O75323 286 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM63AO94886 807 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 TPBGLP0DKB5 382 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 HLA-DPA1P20036 260 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 KRT6CP48668 564 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 B2MP61769 119 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SP140Q13342 867 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CDONQ4KMG0 1287 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM52BQ4KMG9 183 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF789Q5FWF6 425 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 KIAA1614Q5VZ46 1190 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 UNQ6494/PRO21346Q6UXR6 183 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM83HQ6ZRV2 1179 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 OTOAQ7RTW8 1153 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF527Q8NB42 609 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 MINDY2Q8NBR6 621 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 PPP4R1Q8TF05 950 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 MTFMTQ96DP5 389 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 COQ10AQ96MF6 247 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CDC6Q99741 560 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 STN1Q9H668 368 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC40Q9H9A6 602 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 APMAPQ9HDC9 416 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 IL17CQ9P0M4 197 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ACTR3BQ9P1U1 418 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 PAK5Q9P286 719 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 APPL1Q9UKG1 709 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 SCN2AQ99250 2005 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RELNP78509 3460 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CAPN14A8MX76 684 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CLOCKO15516 846 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RBMS1P29558 406 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 CSTF2P33240 577 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RPIAP49247 311 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 FASTKD3Q14CZ7 662 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF423Q2M1K9 1284 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RSBN1Q5VWQ0 802 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 FAM122CQ6P4D5 195 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 ATG14Q6ZNE5 492 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC74BQ6ZQY2 392 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RAB11FIP2Q7L804 512 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 TEX26Q8N6G2 289 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 OR4C6Q8NH72 309 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 BTN2A2Q8WVV5 523 aa7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMCH1-219ENST00000514096 RHBGQ9H310 441 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms