RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 CDC16Q13042 620 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 PWP1Q13610 501 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 FAM53BQ14153 422 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 GRM7Q14831 915 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 EFTUD2Q15029 972 aaKnown RBP eCLIP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 PHKG1Q16816 387 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 TBC1D25Q3MII6 688 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 GGTA1PQ4G0N0 100 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 LIPJQ5W064 366 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 ATG9BQ674R7 924 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 DUS1LQ6P1R4 473 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 PRMT9Q6P2P2 845 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 FIGLAQ6QHK4 219 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 USP53Q70EK8 1073 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CMC1Q7Z7K0 106 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 SRRM1Q8IYB3 904 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 KRT78Q8N1N4 520 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 SRFBP1Q8NEF9 429 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 TRPV3Q8NET8 790 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 N4BP2L2Q92802 583 aaPredicted RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 NXNL1Q96CM4 212 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 APOPT1Q96IL0 206 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 METTL2AQ96IZ6 378 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 MAP3K3Q99759 626 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 EGFL8Q99944 293 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 ZFYVE21Q9BQ24 234 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 AIF1LQ9BQI0 150 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 NTMT1Q9BV86 223 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 SCNM1Q9BWG6 230 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CD244Q9BZW8 370 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 VPS11Q9H270 941 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 FGF21Q9NSA1 209 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 DNAJC11Q9NVH1 559 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 WWOXQ9NZC7 414 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CD274Q9NZQ7 290 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 OPTCQ9UBM4 332 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CDC14AQ9UNH5 594 aa8.14□□□□□ -1.11
PDGFC-205ENST00000506880 RUVBL2Q9Y230 463 aaKnown RBP8.14□□□□□ -1.11
PDGFC-205ENST00000506880 CHD8Q9HCK8 2581 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 A0A088AWK7 358 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 IGHV5-51A0A0C4DH38 117 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 NPEPPSL1A6NEC2 478 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 C21orf140B9A014 251 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 STMND1H3BQB6 276 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 CDC7O00311 574 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 COPEO14579 308 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 HYAL3O43820 417 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 CPNE3O75131 537 aaKnown RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ZWINTO95229 277 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 MTHFD2P13995 350 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GFAPP14136 432 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 EPB42P16452 691 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 KRT4P19013 534 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ZNF10P21506 573 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ATP1A2P50993 1020 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GFERP55789 205 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PCBP4P57723 403 aaKnown RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 HERVK_113P63132 956 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GABREP78334 506 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PHEXP78562 749 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 FOXC1Q12948 553 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 TUBB3Q13509 450 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 NAE1Q13564 534 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 TCEA2Q15560 299 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PDK4Q16654 411 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 HIST2H2ACQ16777 129 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 NDUFA9Q16795 377 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 KCTD19Q17RG1 926 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PTCHD3Q3KNS1 767 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 KRT71Q3SY84 523 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 THEMIS2Q5TEJ8 643 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 NKAIN2Q5VXU1 208 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 HIST2H2AA3Q6FI13 130 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 NAPRTQ6XQN6 538 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 RNF165Q6ZSG1 346 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 MED25Q71SY5 747 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PAQR7Q86WK9 346 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 SFTPA2Q8IWL1 248 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GSPT2Q8IYD1 628 aaKnown RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 DNAJC22Q8N4W6 341 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ESX1Q8N693 406 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PNPLA1Q8N8W4 532 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 KDF1Q8NAX2 398 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 CAMKVQ8NCB2 501 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 KCTD4Q8WVF5 259 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 SLC5A11Q8WWX8 675 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GATA6Q92908 595 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 FGF11Q92914 225 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 RERGQ96A58 199 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PTERQ96BW5 349 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 FAM136AQ96C01 138 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ZNF501Q96CX3 271 aaPredicted RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 L3HYPDHQ96EM0 354 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 PTCD3Q96EY7 689 aaKnown RBP8.13□□□□□ -1.11
PDGFC-205ENST00000506880 VPS50Q96JG6 964 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 CCT7Q99832 543 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ERVK-6Q9BXR3 956 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 GPR87Q9BY21 358 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 ALG9Q9H6U8 611 aa8.13□□□□□ -1.11
PDGFC-205ENST00000506880 CAB39LQ9H9S4 337 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms