RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	TNFSF15	O95150	251 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	EBLN1	P0CF75	366 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FGF5	P12034	268 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NCF1	P14598	390 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	H2AFX	P16104	143 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	HRH2	P25021	359 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RBMS1	P29558	406 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLC6A12	P48065	614 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	YBX1	P67809	324 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SH3BP2	P78314	561 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RELA	Q04206	551 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KCNAB1	Q14722	419 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KRT71	Q3SY84	523 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FCRL6	Q6DN72	434 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZNF425	Q6IV72	752 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FOXR1	Q6PIV2	292 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TRABD2A	Q86V40	505 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	THOC6	Q86W42	341 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	C17orf64	Q86WR6	236 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM151A	Q8N4L1	468 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DNAJC22	Q8N4W6	341 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR8K5	Q8NH50	307 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	EXT2	Q93063	718 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ALKBH8	Q96BT7	664 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SCYL1	Q96KG9	808 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TEFM	Q96QE5	360 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR4K3	Q96R72	315 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR6C1	Q96RD1	312 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DPH7	Q9BTV6	452 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DDA1	Q9BW61	102 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ASPSCR1	Q9BZE9	553 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KLHL25	Q9H0H3	589 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	MRPL46	Q9H2W6	279 aa	Known RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FAM60A	Q9NP50	221 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLC6A20	Q9NP91	592 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ASCL3	Q9NQ33	180 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM184C	Q9NVA4	438 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	WWOX	Q9NZC7	414 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM216	Q9P0N5	145 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	XPR1	Q9UBH6	696 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DKK4	Q9UBT3	224 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SNX7	Q9UNH6	387 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PCDHGA7	Q9Y5G6	932 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	AK5	Q9Y6K8	562 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	APC2	O95996	2303 aa		11.44	□□□□□ -0.58
PDLIM5-208	ENST00000504489	IGKV1-8	A0A0C4DH67	115 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	OR2A25	A4D2G3	310 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	POLR1C	O15160	346 aa	Predicted RBP	11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	NVL	O15381	856 aa	Known RBP	11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GLRA3	O75311	464 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	STK16	O75716	305 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	WDR47	O94967	919 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KRT4	P19013	534 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CRHR1	P34998	444 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GABRA4	P48169	554 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CCT5	P48643	541 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	MAPK10	P53779	464 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ALDH18A1	P54886	795 aa	Known RBP	11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ERVPABLB-1	P60509	514 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TUBB3	Q13509	450 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	C18orf21	Q32NC0	220 aa	Predicted RBP	11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CEP85L	Q5SZL2	805 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	DCAF12	Q5T6F0	453 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM164	Q5U3C3	297 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CEACAM20	Q6UY09	585 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CDHR3	Q6ZTQ4	885 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PAQR7	Q86WK9	346 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ABHD11	Q8NFV4	315 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	UBTD2	Q8WUN7	234 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	USP7	Q93009	1102 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZNF578	Q96N58	590 aa	Predicted RBP	11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FCRL4	Q96PJ5	515 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PLCD4	Q9BRC7	762 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ZPBP	Q9BS86	351 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	TMEM79	Q9BSE2	394 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CD244	Q9BZW8	370 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	APMAP	Q9HDC9	416 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FGF21	Q9NSA1	209 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	ABCF3	Q9NUQ8	709 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SENP1	Q9P0U3	644 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GRID1	Q9ULK0	1009 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PLCL2	Q9UPR0	1127 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SLC22A14	Q9Y267	594 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	KLHL20	Q9Y2M5	609 aa		11.43	□□□□□ -0.58
PDLIM5-208	ENST00000504489	C9orf172	C9J069	976 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489		H7BY64	318 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	RGS16	O15492	202 aa	Predicted RBP	11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	BRINP1	O60477	761 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CTSV	O60911	334 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SMIM24	O75264	130 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SBK3	P0C264	359 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GFAP	P14136	432 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GDF5	P43026	501 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	HSPA7	P48741	367 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	FOXM1	Q08050	763 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	CASP8	Q14790	479 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	SETDB1	Q15047	1291 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	GPR19	Q15760	415 aa		11.42	□□□□□ -0.58
PDLIM5-208	ENST00000504489	PFKFB4	Q16877	469 aa		11.42	□□□□□ -0.58

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