RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SAP18O00422 153 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 CHST10O43529 356 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MFN2O95140 757 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 PSMA1P25786 263 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 AFF1P51825 1210 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MS4A2Q01362 244 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 ATP13A5Q4VNC0 1218 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 HDAC2Q92769 488 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC39A13Q96H72 371 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TUBA1CQ9BQE3 449 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 ZC4H2Q9NQZ6 224 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 PTGFRNQ9P2B2 879 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 A0A1B0GW55 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 CCDC182A6NF36 153 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 EIF3FO00303 357 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TGFB1P01137 390 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L2P0CJ85 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L3P0CJ86 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L4P0CJ87 422 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L5P0CJ88 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L6P0CJ89 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4L7P0CJ90 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MTAPQ13126 283 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 SNAPC1Q16533 368 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 OR10G6Q8NH81 332 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 EZH1Q92800 747 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 TTLL2Q9BWV7 592 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 MAGIXQ9H6Y5 334 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 DUX4Q9UBX2 424 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 LOC110117498-PIK3R3F6TDL0 507 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 OR6B1O95007 311 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 RPS17P08708 135 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 CD247P20963 164 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 CPOXP36551 454 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 GRIA2P42262 883 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 PTGR1Q14914 329 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 CD200R1Q8TD46 325 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 C12orf43Q96C57 262 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 EQTNQ9NQ60 294 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 PEX16Q9Y5Y5 336 aa10.47□□□□□ -0.73
LIMCH1-205ENST00000503057 GRXCR2A6NFK2 248 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 NME4O00746 187 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 SOCS2O14508 198 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 TP73O15350 636 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 NME6O75414 186 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 HSD3B1P14060 373 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 C4BPBP20851 252 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 NR4A1P22736 598 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 HSD3B2P26439 372 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 ALDH4A1P30038 563 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 MAGEA12P43365 314 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 PYDC2Q56P42 97 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 NOXRED1Q6NXP6 359 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 LARP4Q71RC2 724 aaKnown RBP eCLIP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 CMTR2Q8IYT2 770 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 ACVR1CQ8NER5 493 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 OR52B6Q8NGF0 335 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 OR14C36Q8NHC7 312 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC5A11Q8WWX8 675 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 GATA6Q92908 595 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 IRF7Q92985 503 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 LRIG1Q96JA1 1093 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 MYOCQ99972 504 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 SPATA9Q9BWV2 254 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 FOCADQ5VW36 1801 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 PRSS56P0CW18 603 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 AMD1P17707 334 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 GPX3P22352 226 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 TPP2P29144 1249 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 CAPZA2P47755 286 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 CHST15Q7LFX5 561 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 C9orf43Q8TAL5 461 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 ARRDC2Q8TBH0 407 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 UBASH3BQ8TF42 649 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 RGMAQ96B86 450 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 C12orf66Q96MD2 445 aa10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 MCCC1Q96RQ3 725 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-205ENST00000503057 DFNA5O60443 496 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 BCKDHAP12694 445 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 PRG2P13727 222 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 GGT1P19440 569 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 CRISP3P54108 245 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 STX4Q12846 297 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 TYSND1Q2T9J0 566 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 OGFOD2Q6N063 350 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 METTL2BQ6P1Q9 378 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 LRRTM4Q86VH4 590 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 HEATR4Q86WZ0 1026 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 LGI4Q8N135 537 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 MINDY2Q8NBR6 621 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 CRELD1Q96HD1 420 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 CASD1Q96PB1 797 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 MRPS30Q9NP92 439 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 C11orf16Q9NQ32 467 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 MROH6A6NGR9 719 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 EFCAB9A8MZ26 197 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 TMCC2O75069 709 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 CHRM1P11229 460 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 POU2F1P14859 743 aa10.46□□□□□ -0.74
LIMCH1-205ENST00000503057 ERVPABLB-1P60509 514 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms