RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 LRRC70Q7Z2Q7 622 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 TMPRSS11BQ86T26 416 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 SLC22A9Q8IVM8 553 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 KLHDC8AQ8IYD2 350 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 RDH11Q8TC12 318 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 MGARPQ8TDB4 240 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 MOCOSQ96EN8 888 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 SLC41A2Q96JW4 573 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 CMKLR1Q99788 373 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 FAM60AQ9NP50 221 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 PDE7BQ9NP56 450 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 MLXIPLQ9NP71 852 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 SSU72Q9NP77 194 aaKnown RBP11.44□□□□□ -0.58
CUX1-210ENST00000497815 OCIAD1Q9NX40 245 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 COPG2Q9UBF2 871 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 MID2Q9UJV3 735 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 KLK13Q9UKR3 277 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 SNX7Q9UNH6 387 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 LOXL2Q9Y4K0 774 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 TNPO3Q9Y5L0 923 aaKnown RBP11.44□□□□□ -0.58
CUX1-210ENST00000497815 KCNE2Q9Y6J6 123 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 GOLGA4Q13439 2230 aaKnown RBP11.44□□□□□ -0.58
CUX1-210ENST00000497815 ASXL3Q9C0F0 2248 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 COL27A1Q8IZC6 1860 aaPredicted RBP11.44□□□□□ -0.58
CUX1-210ENST00000497815 CEP250Q9BV73 2442 aa11.44□□□□□ -0.58
CUX1-210ENST00000497815 CCDC187A0A096LP49 1063 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 TMEM120BA0PK00 339 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 WDR91A4D1P6 747 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 E2F3O00716 465 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 HGSO14964 777 aaPredicted RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 CLGNO14967 610 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PRPF4O43172 522 aaKnown RBP eCLIP11.43□□□□□ -0.583e-6■■□□□ 11.6
CUX1-210ENST00000497815 SUPT7LO94864 414 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 FKBP9O95302 570 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 FOLR1P15328 257 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 EPB42P16452 691 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 TSPAN8P19075 237 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 GNAZP19086 355 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 ITIH1P19827 911 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 VARSP26640 1264 aaKnown RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 ARL1P40616 181 aaPredicted RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 MAPK10P53779 464 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PRKAA2P54646 552 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 NFKB2Q00653 900 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 GTF2H2Q13888 395 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PCLAFQ15004 111 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PCBP2Q15366 365 aaKnown RBP eCLIP11.43□□□□□ -0.582e-6■■■■■ 33.7
CUX1-210ENST00000497815 GPR19Q15760 415 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 XKR6Q5GH73 641 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 TMTC4Q5T4D3 741 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 GTF2H2CQ6P1K8 395 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 GOLGA7Q7Z5G4 137 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 KMT5CQ86Y97 462 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PLD3Q8IV08 490 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 C10orf107Q8IVU9 208 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 CARFQ8N187 725 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 CCNYL1Q8N7R7 359 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PPP4R1Q8TF05 950 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 N4BP2L2Q92802 583 aaPredicted RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 RNF31Q96EP0 1072 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 TCTN2Q96GX1 697 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 LIN37Q96GY3 246 aaPredicted RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 PKNOX2Q96KN3 472 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 NSUN5Q96P11 429 aaKnown RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 FCRL4Q96PJ5 515 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 TMEM237Q96Q45 408 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PAIP2Q9BPZ3 127 aaKnown RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 PLCD4Q9BRC7 762 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 MECRQ9BV79 373 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 SEMA4BQ9NPR2 832 aaPredicted RBP11.43□□□□□ -0.58
CUX1-210ENST00000497815 SEMA5BQ9P283 1151 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PISDQ9UG56 409 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 PCTPQ9UKL6 214 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 SATB2Q9UPW6 733 aa11.43□□□□□ -0.58
CUX1-210ENST00000497815 A0A0J9YVX5 310 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 A0A1W2PNU3 283 aaPredicted RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 FEZF1A0PJY2 475 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 HMGB1P1B2RPK0 211 aaPredicted RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 HAT1O14929 419 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 PLD2O14939 933 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 TM9SF1O15321 606 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 HCRTR1O43613 425 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CTSVO60911 334 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 KATNA1O75449 491 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ZWINTO95229 277 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 RPS17P08708 135 aaKnown RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 JMJD7P0C870 316 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 FGF3P11487 239 aaPredicted RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 EPORP19235 508 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 IMPDH1P20839 514 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ALDH3A1P30838 453 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CCR8P51685 355 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CDH13P55290 713 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 HERVK_113P63132 956 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CSNK1G2P78368 415 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CYP4F3Q08477 520 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 TUBB3Q13509 450 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 COL9A2Q14055 689 aaPredicted RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 NAA25Q14CX7 972 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 RBBP7Q16576 425 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms