RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-209	ENST00000496445	IGHE	P01854	428 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	EIF2S1	P05198	315 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	MPC1L	P0DKB6	136 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	PIM1	P11309	404 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	PGAM1	P18669	254 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	GNLY	P22749	145 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	IMPA1	P29218	277 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	RPA3	P35244	121 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	SOX8	P57073	446 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	ARF3	P61204	181 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	TAP2	Q03519	686 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	DHX9	Q08211	1270 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	TSTA3	Q13630	321 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	PTK6	Q13882	451 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	CRYM	Q14894	314 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	NAA25	Q14CX7	972 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	INPP5J	Q15735	1006 aa	Predicted RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	FAM214A	Q32MH5	1076 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	MSS51	Q4VC12	460 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	HSP90AA5P	Q58FG0	334 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	ICE2	Q659A1	982 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	KCNMB4	Q86W47	210 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	LMNTD2	Q8IXW0	634 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	ARHGEF39	Q8N4T4	335 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	EFCAB3	Q8N7B9	438 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	INPP5D	Q92835	1189 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	AARSD1	Q9BTE6	412 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	DDX47	Q9H0S4	455 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	CCDC68	Q9H2F9	335 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	PLAC1	Q9HBJ0	212 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	IARS2	Q9NSE4	1012 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	TRMT1	Q9NXH9	659 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	NXT1	Q9UKK6	140 aa	Known RBP	13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	HIVEP3	Q5T1R4	2406 aa		13.62	□□□□□ -0.23
VTI1A-209	ENST00000496445	USP27X	A6NNY8	438 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	ZSCAN12	O43309	604 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	VPS4B	O75351	444 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	ENO3	P13929	434 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	SKIV2L2	P42285	1042 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	PRDX1	Q06830	199 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	PPP1R7	Q15435	360 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	HKDC1	Q2TB90	917 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	KIRREL2	Q6UWL6	708 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	IGFL3	Q6UXB1	125 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	C2CD4A	Q8NCU7	369 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	CALML6	Q8TD86	181 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	SLCO2A1	Q92959	643 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	NACC2	Q96BF6	587 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	NDN	Q99608	321 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	FAM167B	Q9BTA0	163 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	ZNF304	Q9HCX3	659 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	SLAMF7	Q9NQ25	335 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	CUEDC1	Q9NWM3	386 aa	Predicted RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	SLC17A6	Q9P2U8	582 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	ASIC3	Q9UHC3	531 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	VPS4A	Q9UN37	437 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	RUVBL1	Q9Y265	456 aa	Known RBP	13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	COMMD10	Q9Y6G5	202 aa		13.61	□□□□□ -0.23
VTI1A-209	ENST00000496445	IGLV3-12	A0A075B6K2	115 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ZNF839	A8K0R7	811 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	SMAP	O00193	183 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	EIF3F	O00303	357 aa	Predicted RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	HAT1	O14929	419 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	P2RX6	O15547	441 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	VPS26A	O75436	327 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	CCNDBP1	O95273	360 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	SYF2	O95926	243 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ERVK-10	P10266	1014 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ITGA3	P26006	1051 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	IVD	P26440	423 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	GABRB3	P28472	473 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	HSD17B2	P37059	387 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	SNRPN	P63162	240 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	KLC1	Q07866	573 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	AIMP2	Q13155	320 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	RBBP7	Q16576	425 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	MUM1	Q2TAK8	710 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	PLEKHN1	Q494U1	663 aa	Predicted RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	RBM20	Q5T481	1227 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	PRAMEF13	Q5VWM6	474 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	PRMT9	Q6P2P2	845 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	UBE2R2	Q712K3	238 aa	Predicted RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	IGDCC3	Q8IVU1	814 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	CNTN4	Q8IWV2	1026 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	CSNK1A1L	Q8N752	337 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	OR11G2	Q8NGC1	345 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	STT3B	Q8TCJ2	826 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	C19orf60	Q96EN9	201 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	CABS1	Q96KC9	395 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	OR2A5	Q96R48	311 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	WDR83	Q9BRX9	315 aa	Known RBP	13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ATP13A2	Q9NQ11	1180 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	SEMA3G	Q9NS98	782 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ABCF3	Q9NUQ8	709 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	PCYOX1	Q9UHG3	505 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	ADAMTS6	Q9UKP5	1117 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	CSAG2	Q9Y5P2	127 aa		13.6	□□□□□ -0.23
VTI1A-209	ENST00000496445	SPTBN1	Q01082	2364 aa	Known RBP	13.6	□□□□□ -0.23

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